Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulations:

Simulation overview

Simulation_2

Simulation_1

Simulation: simulation_2

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

D-Citrulline

Simulation outputs:

InChI=1S/C6H13N3O3/c7-4(5(10)11)2-1-3-9-6(8)12/h4H,1-3,7H2,(H,10,11)(H3,8,9,12)/t4-/m0/s1 Parameter Value
Field strength 899.75(MHz)
RMSD of the fit 0.03847
Temperature 298 K
pH 7.4
InChI InChI=1S/C6H13N3O3/c7-4(5(10)11)2-1-3-9-6(8)12/h4H,1-3,7H2,(H,10,11)(H3,8,9,12)/t4-/m0/s1
pKa 2.43
pKa 9.69
Note 1 None

Sample description:

Compound Type Concentration
D-Citrulline Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

13 14 15 16 19 17 18
13 1.851 -12.818 14.838 2.578 0 6.832 7.842
14 0 1.88 2.578 14.838 0 7.842 6.832
15 0 0 1.532 -13.869 7.45 0 0
16 0 0 0 1.594 6.573 0 0
19 0 0 0 0 3.743 0 0
17 0 0 0 0 0 3.126 -14.301
18 0 0 0 0 0 0 3.138

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.110729 standard
0.121636 standard
0.124662 standard
0.14717 standard
0.287148 standard
0.301057 standard
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0.311698 standard
0.237277 standard
0.2114 standard
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0.31893 standard
0.37975 standard
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0.319736 standard
0.264602 standard
0.256182 standard
0.258126 standard
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0.166003 standard
0.15733 standard
0.122191 standard
0.089387 standard
0.0582256 standard
0.0457515 standard
0.0648631 standard
0.127946 standard
0.579268 standard
0.607641 standard
0.995145 standard
1.00021 standard
0.607201 standard
0.577492 standard
0.127585 standard
0.0643271 standard
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1.0 standard
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0.204876 standard
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0.59693 standard
0.788906 standard
1.0 standard
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0.786979 standard
0.4301 standard
0.382109 standard
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0.0100421 standard
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0.276384 standard
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0.31524 standard
0.61574 standard
0.728497 standard
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0.55042 standard
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0.427234 standard
0.234166 standard
0.26006 standard
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0.125148 standard
0.716259 standard
1.0 standard
0.458076 standard
0.298329 standard
0.563475 standard
0.323592 standard
0.00827013 standard
0.111113 standard
0.174103 standard
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0.334355 standard
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1.0 standard
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0.232011 standard
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1.0 standard
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0.0187101 standard
0.0366862 standard
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0.0652243 standard
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0.019957 standard
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1.0 standard
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1.00012 standard
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1.00001 standard
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0.555992 standard
1.00004 standard
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0.612053 standard
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1.00015 standard
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1.0 standard
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1.00003 standard
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1.0002 standard
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1.0 standard
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