Guided Ideographic Spin System Model Optimization

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Web Services:

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Mixture Simulation

Mol to jpg conversion

Simulations:

Simulation overview

Simulation_2

Simulation_1

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

L-proline

Simulation outputs:

InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01504
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1
pKa 1.95
pKa 10.64
Note 1 None

Sample description:

Compound Type Concentration
L-Proline Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 0.1%
Show/Hide Spin System Matrix

Spin System Matrix

9 10 11 12 15 13 14
9 2.01 -12.785 8.956 7.284 0 7.297 6.167
10 0 1.983 6.621 8.206 0 6.562 7.963
11 0 0 2.059 -13.623 6.897 0 0
12 0 0 0 2.338 9.196 0 0
15 0 0 0 0 4.119 0 0
13 0 0 0 0 0 3.324 -11.564
14 0 0 0 0 0 0 3.407

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
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PPM Amplitude Peak Type
0.0282158 standard
0.084415 standard
0.170402 standard
0.150124 standard
0.513881 standard
0.923573 standard
1.00004 standard
0.732909 standard
0.309292 standard
0.485392 standard
0.271912 standard
0.483371 standard
0.407915 standard
0.508263 standard
0.38095 standard
0.14228 standard
0.00489933 standard
0.00852305 standard
0.014246 standard
0.0643244 standard
0.0881828 standard
0.090213 standard
0.294235 standard
0.302206 standard
0.271431 standard
0.37662 standard
0.341385 standard
0.254876 standard
0.303638 standard
0.259777 standard
0.257343 standard
0.150826 standard
0.205961 standard
0.107418 standard
0.431334 standard
0.444604 standard
0.383002 standard
0.781145 standard
0.445156 standard
0.020249 standard
0.355295 standard
0.184079 standard
0.553304 standard
0.324036 standard
0.50082 standard
0.349931 standard
0.341373 standard
0.259839 standard
0.69485 standard
0.761944 standard
0.632523 standard
0.553557 standard
0.0250671 standard
0.061255 standard
0.0870153 standard
0.277295 standard
0.988172 standard
1.0 standard
0.631294 standard
0.236056 standard
0.156399 standard
0.112786 standard
0.0679423 standard
0.041563 standard
0.0261481 standard
0.0322661 standard
0.0358861 standard
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0.485515 standard
0.820506 standard
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0.224222 standard
0.38547 standard
0.143189 standard
0.0115561 standard
0.036076 standard
0.0774261 standard
0.370959 standard
0.547478 standard
0.789482 standard
1.0 standard
0.869697 standard
0.728378 standard
0.193738 standard
0.304431 standard
0.109623 standard
0.146903 standard
0.0972471 standard
0.057006 standard
0.0252151 standard
0.0250541 standard
0.0105391 standard
0.0260891 standard
0.0589421 standard
0.52504 standard
0.873954 standard
0.407657 standard
0.0204221 standard
0.0115691 standard
0.26459 standard
0.160831 standard
0.459753 standard
0.183897 standard
0.00961013 standard
0.056092 standard
0.0986452 standard
0.174361 standard
0.354164 standard
0.825999 standard
0.829433 standard
0.980781 standard
0.814611 standard
1.0 standard
0.51758 standard
0.44379 standard
0.453815 standard
0.253575 standard
0.230167 standard
0.319914 standard
0.139767 standard
0.182613 standard
0.186194 standard
0.171363 standard
0.0848971 standard
0.044002 standard
0.0113431 standard
0.0108911 standard
0.0404834 standard
0.095536 standard
0.592717 standard
0.959902 standard
0.88707 standard
0.546868 standard
0.0966974 standard
0.0302441 standard
0.034315 standard
0.0137281 standard
0.362536 standard
0.507776 standard
0.237681 standard
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0.0609701 standard
0.105327 standard
0.196214 standard
0.821708 standard
0.906971 standard
1.0 standard
0.760533 standard
0.81393 standard
0.590647 standard
0.296418 standard
0.338788 standard
0.194971 standard
0.216722 standard
0.347397 standard
0.144477 standard
0.195687 standard
0.192862 standard
0.186265 standard
0.0898722 standard
0.0474971 standard
0.04858 standard
0.0117601 standard
0.0103481 standard
0.0443281 standard
0.102743 standard
0.48706 standard
0.597463 standard
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0.556423 standard
0.398497 standard
0.107161 standard
0.041724 standard
0.0124571 standard
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0.475094 standard
0.466601 standard
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0.230596 standard
0.272279 standard
0.0327731 standard
0.0634606 standard
0.104314 standard
0.807455 standard
0.897367 standard
1.00001 standard
0.692263 standard
0.496241 standard
0.454285 standard
0.348554 standard
0.182879 standard
0.215151 standard
0.332375 standard
0.19419 standard
0.187957 standard
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0.0880403 standard
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0.0295091 standard
0.00837504 standard
0.0219052 standard
0.0922213 standard
0.130088 standard
0.289008 standard
0.408685 standard
0.769206 standard
0.819266 standard
1.00001 standard
0.687892 standard
0.393282 standard
0.251078 standard
0.0985784 standard
0.0399681 standard
0.065665 standard
0.0529474 standard
0.0989423 standard
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0.200315 standard
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0.334504 standard
0.186405 standard
0.212599 standard
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0.0796153 standard
0.00777504 standard
0.00846013 standard
0.0892944 standard
0.171739 standard
0.359288 standard
0.273541 standard
0.697873 standard
0.589199 standard
0.660458 standard
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0.352701 standard
0.175269 standard
0.0975923 standard
0.456306 standard
0.497654 standard
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0.025007 standard
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1.0 standard
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0.0264087 standard
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0.0701716 standard
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0.137368 standard
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0.534109 standard
0.605705 standard
0.751442 standard
0.984079 standard
0.548119 standard
1.00004 standard
0.699944 standard
0.511167 standard
0.539752 standard
0.433533 standard
0.14526 standard
0.0135281 standard
0.0271856 standard
0.103793 standard
0.106864 standard
0.312817 standard
0.300969 standard
0.28565 standard
0.413558 standard
0.335858 standard
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0.27682 standard
0.248006 standard
0.235778 standard
0.145554 standard
0.194038 standard
0.104939 standard
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0.407358 standard
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0.201193 standard
0.634401 standard
0.319825 standard
0.523245 standard
0.354553 standard
0.247569 standard
0.727309 standard
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0.602905 standard
0.532026 standard
0.0282088 standard
0.0845101 standard
0.169897 standard
0.150437 standard
0.515322 standard
0.925514 standard
1.00004 standard
0.732639 standard
0.308981 standard
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0.483637 standard
0.407751 standard
0.508081 standard
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0.00489133 standard
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0.0642231 standard
0.0881238 standard
0.0901596 standard
0.294677 standard
0.301911 standard
0.272359 standard
0.376649 standard
0.340889 standard
0.255459 standard
0.303607 standard
0.259287 standard
0.257244 standard
0.150788 standard
0.206641 standard
0.107724 standard
0.431238 standard
0.444538 standard
0.382896 standard
0.780892 standard
0.445015 standard
0.020229 standard
0.355177 standard
0.183984 standard
0.553068 standard
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0.500673 standard
0.350306 standard
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0.17621 standard
0.547055 standard
1.00013 standard
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0.644728 standard
0.367566 standard
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0.36462 standard
0.14516 standard
0.00372905 standard
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0.767109 standard
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0.607334 standard
0.0496954 standard
0.142263 standard
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0.259524 standard
0.556846 standard
0.907237 standard
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0.695851 standard
0.414265 standard
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0.634157 standard
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0.204356 standard
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0.487182 standard
1.00079 standard
0.539234 standard
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0.468708 standard
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0.193169 standard
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0.35145 standard
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1.00016 standard
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1.00126 standard
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0.197848 standard
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1.00113 standard
0.997643 standard
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0.0690371 standard
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0.609677 standard
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0.34101 standard
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0.200467 standard
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0.447299 standard
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0.48032 standard
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1.00157 standard
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0.616063 standard
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0.574992 standard
0.520148 standard
0.503928 standard
0.404214 standard
0.884357 standard
1.00064 standard
1.00174 standard
0.888166 standard
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