Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulations:

Simulation overview

Simulation_1

Simulation_2

Simulation: simulation_2

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

1-3-Diaminopropane

Simulation outputs:

InChI=1S/C3H10N2/c4-2-1-3-5/h1-5H2 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.01801
Temperature 298 K
pH 7.4
InChI InChI=1S/C3H10N2/c4-2-1-3-5/h1-5H2
pKa 9.69
pKa 7.93
Note 1 high pH. dissolved DAP in D2O.

Sample description:

Compound Type Concentration
1,3-diaminopropane Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 0.1%
Show/Hide Spin System Matrix

Spin System Matrix

6 7 8 9 10 11
6 1.704 -15.575 8.455 8.041 10.583 7.9
7 0 1.71 9.499 5.117 9.322 7.111
8 0 0 2.778 -11.744 -0.049 0.424
9 0 0 0 2.778 0.532 0.046
10 0 0 0 0 2.778 -12.145
11 0 0 0 0 0 2.779

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.0708994 standard
0.234789 standard
0.336666 standard
0.24305 standard
0.0785182 standard
0.515601 standard
1.00009 standard
0.487202 standard
0.164848 standard
0.312398 standard
0.331001 standard
0.154906 standard
0.154082 standard
0.743244 standard
1.0 standard
0.348174 standard
0.0511181 standard
0.183217 standard
0.322541 standard
0.289536 standard
0.117426 standard
0.649354 standard
1.0 standard
0.380103 standard
0.0539491 standard
0.194245 standard
0.32815 standard
0.276251 standard
0.104542 standard
0.604932 standard
1.0 standard
0.402479 standard
0.0554701 standard
0.19826 standard
0.329609 standard
0.272437 standard
0.100992 standard
0.591636 standard
1.0 standard
0.41096 standard
0.0569501 standard
0.201916 standard
0.3313 standard
0.270152 standard
0.0984023 standard
0.582042 standard
1.0 standard
0.418098 standard
0.065392 standard
0.221409 standard
0.339765 standard
0.259263 standard
0.088016 standard
0.543365 standard
1.00001 standard
0.458468 standard
0.068428 standard
0.230397 standard
0.340067 standard
0.251882 standard
0.0840881 standard
0.528172 standard
1.00004 standard
0.472313 standard
0.0701422 standard
0.233173 standard
0.340506 standard
0.248202 standard
0.0815003 standard
0.520415 standard
1.0 standard
0.482423 standard
0.0715717 standard
0.234381 standard
0.340166 standard
0.245054 standard
0.0796391 standard
0.516979 standard
1.00002 standard
0.487313 standard
0.0709244 standard
0.23487 standard
0.336641 standard
0.243503 standard
0.0785382 standard
0.515618 standard
1.00009 standard
0.487229 standard
0.004588 standard
0.0696678 standard
0.231903 standard
0.337082 standard
0.242276 standard
0.0777683 standard
0.5175 standard
1.00027 standard
0.489737 standard
0.00464837 standard
0.0687593 standard
0.229049 standard
0.334884 standard
0.241315 standard
0.0777671 standard
0.518344 standard
1.00028 standard
0.488112 standard
0.004713 standard
0.0678766 standard
0.227687 standard
0.332855 standard
0.24121 standard
0.0777594 standard
0.519268 standard
1.00027 standard
0.487524 standard
0.00493523 standard
0.0659255 standard
0.22178 standard
0.328825 standard
0.23851 standard
0.0773312 standard
0.519398 standard
1.00017 standard
0.485755 standard
0.005011 standard
0.0651217 standard
0.21936 standard
0.325423 standard
0.237621 standard
0.0771306 standard
0.520276 standard
1.00018 standard
0.484778 standard
0.00514145 standard
0.0652953 standard
0.215557 standard
0.321527 standard
0.236151 standard
0.0785796 standard
0.522226 standard
1.00001 standard
0.482935 standard
0.005408 standard
0.0665278 standard
0.209167 standard
0.316764 standard
0.236416 standard
0.0800316 standard
0.524461 standard
1.0 standard
0.48245 standard
0.00585103 standard
0.0146026 standard
0.0644866 standard
0.194104 standard
0.297845 standard
0.229171 standard
0.0810884 standard
0.526851 standard
1.00002 standard
0.478815 standard
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