Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

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NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

(2E)-3,7-dimethylocta-2,6-dien-1-ol

Simulation outputs:

InChI=1S/C10H18O/c1-9(2)5-4-6-10(3)7-8-11/h5,7,11H,4,6,8H2,1-3H3/b10-7+ Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01898
Temperature 298 K
pH 7.4
InChI InChI=1S/C10H18O/c1-9(2)5-4-6-10(3)7-8-11/h5,7,11H,4,6,8H2,1-3H3/b10-7+
Note 1 Processed by Tevin Li

Sample description:

Compound Type Concentration
(2E)-3,7-dimethylocta-2,6-dien-1-ol solute 100mM
Chloroform-d solvent 100.0%
TMS reference 0.05%
Show/Hide Spin System Matrix

Spin System Matrix

12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28
12 1.684 -12.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
13 0 1.684 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 0 0 1.687 0 0 0 0 0 0 0 0 0 0 0 0 0 0
15 0 0 0 1.608 0 0 0 0 0 0 0 0 0 0 0 0 0
16 0 0 0 0 1.608 -12.4 0 0 0 0 0 0 0 0 0 0 0
17 0 0 0 0 0 1.608 0 0 0 0 0 0 0 0 0 0 0
18 0 0 0 0 0 0 1.688 -12.4 0 0 0 0 0 0 0 0 0
19 0 0 0 0 0 0 0 1.678 0 0 0 0 0 0 0 0 0
20 0 0 0 0 0 0 0 0 1.689 0 0 0 0 0 0 0 0
21 0 0 0 0 0 0 0 0 0 2.103 -13.932 10.943 9.123 3.339 0 0 0
22 0 0 0 0 0 0 0 0 0 0 2.109 3.521 8.215 9.57 0 0 0
23 0 0 0 0 0 0 0 0 0 0 0 5.097 0 0 0 0 0
24 0 0 0 0 0 0 0 0 0 0 0 0 2.034 -12.989 0 0 0
25 0 0 0 0 0 0 0 0 0 0 0 0 0 2.036 0 0 0
26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5.421 6.679 6.549
27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4.164 -13.384
28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4.153

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.59478 standard
0.0274667 standard
1.0 standard
0.0294233 standard
0.060215 standard
0.0701848 standard
0.154616 standard
0.106704 standard
0.169852 standard
0.0149601 standard
0.0111169 standard
0.0107938 standard
0.088813 standard
0.156359 standard
0.0866622 standard
0.0987372 standard
0.041942 standard
0.0381797 standard
0.00405801 standard
0.00784657 standard
0.0131153 standard
0.246589 standard
0.251168 standard
0.0127712 standard
0.00814627 standard
0.00313323 standard
0.079656 standard
0.0955337 standard
0.0678794 standard
0.0836315 standard
0.162937 standard
0.0835794 standard
0.506621 standard
1.0 standard
0.387196 standard
0.266498 standard
0.0168451 standard
0.00713313 standard
0.162432 standard
0.216426 standard
0.00301612 standard
0.0128771 standard
0.0264271 standard
0.0290451 standard
0.0355591 standard
0.0499531 standard
0.0407501 standard
0.0829383 standard
0.083434 standard
0.0401491 standard
0.449128 standard
1.0 standard
0.0306571 standard
0.431933 standard
0.226029 standard
0.016641 standard
0.00737012 standard
0.185544 standard
0.222339 standard
0.00875712 standard
0.031008 standard
0.0316051 standard
0.0316081 standard
0.0532613 standard
0.0349681 standard
0.0265571 standard
0.065172 standard
0.095719 standard
0.0455263 standard
0.431172 standard
1.00001 standard
0.0159901 standard
0.026148 standard
0.437662 standard
0.190191 standard
0.017602 standard
0.00836512 standard
0.197107 standard
0.225663 standard
0.00602612 standard
0.0342434 standard
0.0349603 standard
0.0562575 standard
0.0371953 standard
0.0290821 standard
0.0632023 standard
0.101967 standard
0.048683 standard
0.427449 standard
1.0 standard
0.0138761 standard
0.0261041 standard
0.423258 standard
0.184842 standard
0.018634 standard
0.008712 standard
0.201315 standard
0.227121 standard
0.00386912 standard
0.034903 standard
0.0363933 standard
0.0573781 standard
0.038412 standard
0.032292 standard
0.0624668 standard
0.104275 standard
0.0498871 standard
0.42596 standard
1.0 standard
0.0129001 standard
0.0269252 standard
0.405092 standard
0.18063 standard
0.065803 standard
0.0190631 standard
0.00914225 standard
0.205225 standard
0.228854 standard
0.00317612 standard
0.035552 standard
0.03825 standard
0.058205 standard
0.0394404 standard
0.0345201 standard
0.00312213 standard
0.0623512 standard
0.106179 standard
0.0509765 standard
0.450096 standard
1.00003 standard
0.0193168 standard
0.0388161 standard
0.035108 standard
0.100946 standard
0.214477 standard
0.168074 standard
0.106718 standard
0.0972568 standard
0.0572177 standard
0.0617365 standard
0.0293929 standard
0.0260971 standard
0.0149941 standard
0.233033 standard
0.247759 standard
0.00166913 standard
0.0511767 standard
0.0620455 standard
0.0466543 standard
0.0481723 standard
0.00217525 standard
0.0658274 standard
0.121121 standard
0.0595827 standard
0.48934 standard
1.0 standard
0.0316597 standard
0.0505559 standard
0.120534 standard
0.194932 standard
0.129711 standard
0.06842 standard
0.132108 standard
0.0816877 standard
0.0671801 standard
0.0449964 standard
0.0297351 standard
0.0219954 standard
0.002762 standard
0.00367438 standard
0.249984 standard
0.256787 standard
0.00386713 standard
0.0624434 standard
0.081514 standard
0.0565922 standard
0.00216625 standard
0.0684608 standard
0.133091 standard
0.0684527 standard
0.537942 standard
0.0240087 standard
1.00006 standard
0.023248 standard
0.0454851 standard
0.0583433 standard
0.13336 standard
0.0945867 standard
0.165934 standard
0.018827 standard
0.107736 standard
0.118488 standard
0.0808506 standard
0.0789607 standard
0.035628 standard
0.0296135 standard
0.00333004 standard
0.00543105 standard
0.0105031 standard
0.257398 standard
0.256989 standard
0.0102171 standard
0.005658 standard
0.002181 standard
0.0708497 standard
0.0927062 standard
0.0606343 standard
0.00209425 standard
0.0754591 standard
0.146975 standard
0.0754551 standard
0.594533 standard
0.0274627 standard
1.0 standard
0.0294173 standard
0.060207 standard
0.0701728 standard
0.154572 standard
0.106645 standard
0.169941 standard
0.0149422 standard
0.0111063 standard
0.0107842 standard
0.0888301 standard
0.157366 standard
0.0866552 standard
0.0987153 standard
0.0419382 standard
0.0381716 standard
0.00405701 standard
0.00784757 standard
0.0131124 standard
0.246517 standard
0.251097 standard
0.012768 standard
0.00814614 standard
0.00313175 standard
0.0796441 standard
0.0955105 standard
0.0678573 standard
0.0836195 standard
0.162915 standard
0.0835673 standard
0.659829 standard
0.0336671 standard
1.00022 standard
0.0374324 standard
0.0747839 standard
0.0833366 standard
0.182936 standard
0.215698 standard
0.0193958 standard
0.00731923 standard
0.00726563 standard
0.0167314 standard
0.119813 standard
0.169927 standard
0.096994 standard
0.119769 standard
0.0508964 standard
0.0455732 standard
0.00487741 standard
0.0110247 standard
0.0164751 standard
0.233495 standard
0.235848 standard
0.235374 standard
0.233014 standard
0.0161128 standard
0.0113793 standard
0.00353402 standard
0.0888437 standard
0.111832 standard
0.085705 standard
0.00617835 standard
0.0927539 standard
0.180753 standard
0.0927528 standard
0.722676 standard
0.041433 standard
1.00023 standard
0.674526 standard
0.046771 standard
0.0898159 standard
0.0971552 standard
0.209575 standard
0.231161 standard
0.00724256 standard
0.00820034 standard
0.0116633 standard
0.127376 standard
0.178408 standard
0.107812 standard
0.135524 standard
0.0595755 standard
0.00577302 standard
0.014838 standard
0.020429 standard
0.226873 standard
0.231588 standard
0.2311 standard
0.226371 standard
0.020007 standard
0.01525 standard
0.00388208 standard
0.0977248 standard
0.110078 standard
0.0970155 standard
0.0063995 standard
0.101811 standard
0.198392 standard
0.10181 standard
0.751659 standard
0.0456321 standard
1.00011 standard
0.671323 standard
0.0516128 standard
0.0974856 standard
0.104108 standard
0.223676 standard
0.236345 standard
0.00570948 standard
0.00674847 standard
0.00549903 standard
0.0118121 standard
0.127957 standard
0.181667 standard
0.113189 standard
0.143794 standard
0.062432 standard
0.00619524 standard
0.016936 standard
0.0226042 standard
0.225504 standard
0.231572 standard
0.231078 standard
0.224992 standard
0.0221513 standard
0.0173407 standard
0.00404302 standard
0.101755 standard
0.110742 standard
0.101388 standard
0.0065305 standard
0.105819 standard
0.206242 standard
0.105819 standard
0.789707 standard
0.0507759 standard
1.00006 standard
0.680441 standard
0.0572759 standard
0.104556 standard
0.111075 standard
0.237581 standard
0.246471 standard
0.00584484 standard
0.00476588 standard
0.00586216 standard
0.00521468 standard
0.012458 standard
0.126209 standard
0.186877 standard
0.118658 standard
0.151948 standard
0.066146 standard
0.0621447 standard
0.00671419 standard
0.0193708 standard
0.0252243 standard
0.229785 standard
0.237096 standard
0.236586 standard
0.229251 standard
0.0247416 standard
0.0198006 standard
0.00421608 standard
0.107162 standard
0.112352 standard
0.106965 standard
0.006742 standard
0.111246 standard
0.216764 standard
0.111246 standard
0.875891 standard
0.062433 standard
0.739548 standard
1.00018 standard
0.709189 standard
0.0707073 standard
0.00419264 standard
0.119624 standard
0.126389 standard
0.267576 standard
0.264509 standard
0.0036245 standard
0.00357201 standard
0.00406102 standard
0.00634147 standard
0.00528906 standard
0.0141009 standard
0.129008 standard
0.201573 standard
0.143043 standard
0.133093 standard
0.170107 standard
0.073988 standard
0.071599 standard
0.00791064 standard
0.00274612 standard
0.0250567 standard
0.0310846 standard
0.240167 standard
0.253139 standard
0.252607 standard
0.239597 standard
0.0305422 standard
0.0255304 standard
0.004614 standard
0.007076 standard
0.11882 standard
0.115428 standard
0.115418 standard
0.118907 standard
0.00717172 standard
0.123375 standard
0.240436 standard
0.123375 standard
0.92354 standard
0.0692135 standard
0.725234 standard
1.00005 standard
0.727593 standard
0.0784346 standard
0.00454013 standard
0.13064 standard
0.136879 standard
0.284062 standard
0.28028 standard
0.00350707 standard
0.00330467 standard
0.00382678 standard
0.00682144 standard
0.00544362 standard
0.0150463 standard
0.12411 standard
0.208637 standard
0.152129 standard
0.141238 standard
0.178192 standard
0.0785617 standard
0.0766882 standard
0.00859827 standard
0.00302641 standard
0.0282596 standard
0.034519 standard
0.249041 standard
0.264298 standard
0.262976 standard
0.247403 standard
0.0340827 standard
0.0287754 standard
0.004821 standard
0.007281 standard
0.125232 standard
0.117705 standard
0.118099 standard
0.125269 standard
0.00739914 standard
0.130048 standard
0.253422 standard
0.130047 standard
0.95559 standard
0.0751273 standard
0.722486 standard
1.0 standard
0.733801 standard
0.0851053 standard
0.00483759 standard
0.1373 standard
0.143497 standard
0.298881 standard
0.292498 standard
0.00339318 standard
0.00309978 standard
0.00364245 standard
0.00717944 standard
0.00552863 standard
0.0157594 standard
0.120297 standard
0.212152 standard
0.155714 standard
0.146431 standard
0.182917 standard
0.0792765 standard
0.0770129 standard
0.00912008 standard
0.00329348 standard
0.0311995 standard
0.0373829 standard
0.25229 standard
0.273365 standard
0.272246 standard
0.250812 standard
0.0369344 standard
0.0317273 standard
0.00741138 standard
0.129739 standard
0.117957 standard
0.12147 standard
0.129779 standard
0.00740641 standard
0.134569 standard
0.262391 standard
0.134732 standard
1.0 standard
0.0857138 standard
0.672925 standard
0.906652 standard
0.949143 standard
0.735612 standard
0.0963919 standard
0.00533451 standard
0.144548 standard
0.151082 standard
0.311408 standard
0.305239 standard
0.00311544 standard
0.00336425 standard
0.00784155 standard
0.0165138 standard
0.110266 standard
0.113386 standard
0.214622 standard
0.160755 standard
0.152472 standard
0.193611 standard
0.0828736 standard
0.0818284 standard
0.0101575 standard
0.00378014 standard
0.0366674 standard
0.0429196 standard
0.254856 standard
0.289236 standard
0.288727 standard
0.254246 standard
0.0423101 standard
0.0371792 standard
0.00736362 standard
0.136085 standard
0.118176 standard
0.123193 standard
0.136184 standard
0.00737684 standard
0.140876 standard
0.27367 standard
0.140875 standard
1.0 standard
0.0992676 standard
0.582571 standard
0.822693 standard
0.829005 standard
0.687308 standard
0.111354 standard
0.00594688 standard
0.149983 standard
0.155555 standard
0.313336 standard
0.301036 standard
0.00284989 standard
0.008626 standard
0.0171953 standard
0.0963293 standard
0.101077 standard
0.204086 standard
0.160549 standard
0.149513 standard
0.190942 standard
0.0878924 standard
0.0812542 standard
0.0814307 standard
0.0112213 standard
0.00457651 standard
0.0444041 standard
0.0501898 standard
0.241938 standard
0.422786 standard
0.241378 standard
0.0496112 standard
0.0448649 standard
0.00606413 standard
0.136518 standard
0.116583 standard
0.122746 standard
0.136628 standard
0.00601546 standard
0.140996 standard
0.273635 standard
0.140996 standard
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