Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Trans 4 Hydroxy-L-proline

Simulation outputs:

InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.01816
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1
Note 1 Copied from spin matrix of bmse000123 then optimized
Note 2 extra coupling @ 11

Sample description:

Compound Type Concentration
4-Hydroxyproline Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 14 12 13 15
10 2.134 -13.95 4.422 0 0 10.3
11 0 2.426 1.365 0 0 7.919
14 0 0 4.656 1.822 3.753 0
12 0 0 0 3.358 -12.609 0
13 0 0 0 0 3.455 0
15 0 0 0 0 0 4.336

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.346807 standard
0.352278 standard
0.367861 standard
0.592998 standard
0.424659 standard
0.411334 standard
0.405455 standard
0.485405 standard
0.488182 standard
0.49505 standard
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1.00106 standard
0.995709 standard
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0.0320471 standard
0.050048 standard
0.234459 standard
0.248154 standard
0.264437 standard
0.297974 standard
0.313996 standard
0.531104 standard
0.340779 standard
0.058465 standard
0.042383 standard
0.0466942 standard
0.033893 standard
0.0157281 standard
0.0277472 standard
1.0 standard
0.887914 standard
0.0290991 standard
0.335102 standard
0.296367 standard
0.288189 standard
0.1356 standard
0.41337 standard
0.269186 standard
0.274915 standard
0.199027 standard
0.087016 standard
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0.032182 standard
0.0506032 standard
1.0 standard
0.901404 standard
0.794462 standard
0.031534 standard
0.0512091 standard
0.384767 standard
0.364392 standard
0.357287 standard
0.296844 standard
0.140738 standard
0.312085 standard
0.312715 standard
0.298709 standard
0.112007 standard
0.0742206 standard
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0.277474 standard
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0.0966991 standard
0.0877155 standard
0.0919426 standard
0.0842848 standard
0.045928 standard
0.0620052 standard
0.67159 standard
1.0 standard
0.615087 standard
0.042501 standard
0.0621721 standard
0.327082 standard
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0.316484 standard
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0.115393 standard
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0.260502 standard
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0.0692271 standard
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0.0853641 standard
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0.048902 standard
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0.565694 standard
1.00001 standard
0.526286 standard
0.0451613 standard
0.0629816 standard
0.288159 standard
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0.23937 standard
0.101791 standard
0.161323 standard
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0.246287 standard
0.228705 standard
0.156728 standard
0.0945803 standard
0.0876984 standard
0.0854011 standard
0.102432 standard
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0.104367 standard
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0.0651513 standard
0.0814332 standard
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1.0 standard
0.580342 standard
0.0603878 standard
0.0804367 standard
0.32425 standard
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0.321862 standard
0.276309 standard
0.11529 standard
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0.177445 standard
0.109152 standard
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0.478182 standard
0.369304 standard
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1.00009 standard
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0.2946 standard
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0.377854 standard
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0.456295 standard
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0.344031 standard
0.339339 standard
0.329907 standard
0.326734 standard
0.424255 standard
0.438609 standard
1.0 standard
0.987308 standard
0.922308 standard
0.909116 standard
0.393416 standard
0.403048 standard
0.636372 standard
0.688045 standard
0.688031 standard
0.636425 standard
0.249228 standard
0.385195 standard
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0.501961 standard
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0.308065 standard
0.312497 standard
0.327385 standard
0.546704 standard
0.405392 standard
0.393605 standard
0.388634 standard
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0.384146 standard
0.38 standard
0.369115 standard
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0.523908 standard
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1.00009 standard
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1.00039 standard
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0.593 standard
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0.485405 standard
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0.425798 standard
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0.415164 standard
0.649035 standard
0.655029 standard
1.00106 standard
0.995704 standard
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0.596418 standard
0.59718 standard
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0.79345 standard
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0.685302 standard
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1.00175 standard
0.997381 standard
0.910179 standard
0.909206 standard
0.63242 standard
0.632134 standard
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0.437594 standard
0.702062 standard
0.706657 standard
1.00212 standard
0.998128 standard
0.908656 standard
0.908191 standard
0.646367 standard
0.645599 standard
0.755477 standard
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1.00191 standard
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1.00213 standard
0.99887 standard
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0.77398 standard
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0.309324 standard
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1.00164 standard
0.998403 standard
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0.701906 standard
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0.315004 standard
0.48225 standard
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0.404674 standard
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1.00215 standard
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1.00241 standard
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1.00207 standard
0.999708 standard
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0.875251 standard
0.875251 standard
0.806528 standard
0.31574 standard
0.507486 standard
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0.49244 standard
0.325168 standard
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