Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

5-Aminovaleric-acid

Simulation outputs:

InChI=1/C5H11NO2/c6-4-2-1-3-5(7)8/h1-4,6H2,(H,7,8)/f/h7H Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01798
Temperature 298 K
pH 7.4
InChI InChI=1/C5H11NO2/c6-4-2-1-3-5(7)8/h1-4,6H2,(H,7,8)/f/h7H
pKa 4.27
pKa 10.77
Note 1 15,16?13,14
Note 2 9,10?11,12

Sample description:

Compound Type Concentration
5-Aminovaleric aci Solute 20mM
D2O Solvent 100%
sodium phosphate Buffer 200mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

9 10 11 12 15 16 13 14
9 1.658 -14.042 10.179 5.573 0 0 7.103 7.103
10 0 1.658 5.573 10.179 0 0 7.103 7.103
11 0 0 1.621 -14.487 7.427 7.427 0 0
12 0 0 0 1.621 7.427 7.427 0 0
15 0 0 0 0 2.221 -14.117 0 0
16 0 0 0 0 0 2.221 0 0
13 0 0 0 0 0 0 2.221 -14.939
14 0 0 0 0 0 0 0 2.221

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.0200713 standard
0.0306686 standard
0.0711909 standard
0.085093 standard
0.0871375 standard
0.124441 standard
0.158627 standard
0.139033 standard
0.230538 standard
0.23842 standard
0.229086 standard
0.262937 standard
0.231879 standard
0.148758 standard
0.158697 standard
0.120947 standard
0.091433 standard
0.0914998 standard
0.0702293 standard
0.032913 standard
0.0227173 standard
0.00364002 standard
0.00541801 standard
0.0056091 standard
0.0145414 standard
0.484634 standard
1.00004 standard
0.452068 standard
0.005054 standard
0.00801513 standard
0.00989013 standard
0.144841 standard
0.413831 standard
0.496463 standard
0.738899 standard
0.697643 standard
0.684452 standard
0.215003 standard
0.597579 standard
0.544467 standard
0.513716 standard
1.0 standard
0.276123 standard
0.242734 standard
0.00638312 standard
0.00852812 standard
0.0112621 standard
0.022632 standard
0.195026 standard
0.456211 standard
0.780404 standard
0.597755 standard
0.429564 standard
0.427196 standard
0.102795 standard
0.0927121 standard
0.0764142 standard
0.0470421 standard
0.160784 standard
0.491261 standard
0.461202 standard
1.0 standard
0.295226 standard
0.007479 standard
0.008588 standard
0.0121301 standard
0.0224921 standard
0.0392463 standard
0.218855 standard
0.482383 standard
0.802095 standard
0.464419 standard
0.561907 standard
0.372205 standard
0.0656984 standard
0.053945 standard
0.0278885 standard
0.0141543 standard
0.026801 standard
0.0227013 standard
0.134165 standard
0.441613 standard
0.390672 standard
0.433074 standard
1.0 standard
0.340362 standard
0.362756 standard
0.290415 standard
0.275593 standard
0.00747613 standard
0.00502213 standard
0.00763825 standard
0.00849125 standard
0.012625 standard
0.0223463 standard
0.0180871 standard
0.0395851 standard
0.220559 standard
0.477456 standard
0.765301 standard
0.438509 standard
0.548282 standard
0.339892 standard
0.06868 standard
0.0556123 standard
0.0492004 standard
0.0241834 standard
0.00771613 standard
0.00872212 standard
0.0185003 standard
0.0214903 standard
0.0194342 standard
0.0306511 standard
0.0537411 standard
0.125477 standard
0.423679 standard
0.360614 standard
0.420513 standard
1.0 standard
0.358454 standard
0.275792 standard
0.263246 standard
0.025353 standard
0.00483312 standard
0.00789013 standard
0.00854113 standard
0.0231731 standard
0.0178632 standard
0.0394957 standard
0.216627 standard
0.474344 standard
0.732846 standard
0.410063 standard
0.543096 standard
0.311314 standard
0.063513 standard
0.0464774 standard
0.0210814 standard
0.00571312 standard
0.0159204 standard
0.018381 standard
0.01754 standard
0.028991 standard
0.049917 standard
0.119327 standard
0.413881 standard
0.338537 standard
0.409247 standard
1.0 standard
0.347624 standard
0.261564 standard
0.025849 standard
0.0129022 standard
0.008339 standard
0.00476812 standard
0.012373 standard
0.0124786 standard
0.0325998 standard
0.0467239 standard
0.0845413 standard
0.104269 standard
0.224361 standard
0.222168 standard
0.563248 standard
0.366289 standard
0.536413 standard
0.543597 standard
0.636559 standard
0.246468 standard
0.0961862 standard
0.0566161 standard
0.0394423 standard
0.0174821 standard
0.0179912 standard
0.00679702 standard
0.0141543 standard
0.0117273 standard
0.0136901 standard
0.0772472 standard
0.429159 standard
0.362567 standard
0.267907 standard
1.00004 standard
0.338708 standard
0.0571531 standard
0.00985833 standard
0.007894 standard
0.0145313 standard
0.0289716 standard
0.0487691 standard
0.0781711 standard
0.089675 standard
0.156746 standard
0.192993 standard
0.406001 standard
0.386802 standard
0.415968 standard
0.427923 standard
0.212141 standard
0.169971 standard
0.102617 standard
0.0852791 standard
0.0551092 standard
0.0321103 standard
0.0341529 standard
0.018172 standard
0.006693 standard
0.008507 standard
0.00966778 standard
0.0133687 standard
0.0251302 standard
0.439781 standard
0.198509 standard
1.00003 standard
0.38482 standard
0.0218848 standard
0.010644 standard
0.00744306 standard
0.00624806 standard
0.0175256 standard
0.0310822 standard
0.0603673 standard
0.0809427 standard
0.0806554 standard
0.141909 standard
0.157073 standard
0.18973 standard
0.303873 standard
0.282096 standard
0.342848 standard
0.297521 standard
0.291611 standard
0.206366 standard
0.172463 standard
0.142509 standard
0.0854812 standard
0.0892985 standard
0.0614212 standard
0.0457102 standard
0.0348463 standard
0.0207699 standard
0.00372216 standard
0.00617528 standard
0.00744457 standard
0.00737504 standard
0.46951 standard
1.00039 standard
0.423881 standard
0.0066015 standard
0.00489688 standard
0.0200592 standard
0.0306876 standard
0.0709913 standard
0.0849588 standard
0.0871592 standard
0.12414 standard
0.159562 standard
0.139046 standard
0.230516 standard
0.238374 standard
0.229054 standard
0.262896 standard
0.231851 standard
0.148735 standard
0.158689 standard
0.120947 standard
0.0914419 standard
0.091511 standard
0.0702334 standard
0.032918 standard
0.0227194 standard
0.00363702 standard
0.00541001 standard
0.00563545 standard
0.0145342 standard
0.484652 standard
1.00003 standard
0.453276 standard
0.00545962 standard
0.005049 standard
0.0227647 standard
0.031445 standard
0.0828213 standard
0.0839851 standard
0.072835 standard
0.0669777 standard
0.111929 standard
0.159122 standard
0.121109 standard
0.184224 standard
0.170606 standard
0.153563 standard
0.142287 standard
0.145103 standard
0.149265 standard
0.17564 standard
0.186885 standard
0.124534 standard
0.163518 standard
0.106998 standard
0.081697 standard
0.0920378 standard
0.0803787 standard
0.0327661 standard
0.0246003 standard
0.00376001 standard
0.0045308 standard
0.496609 standard
1.00001 standard
0.45572 standard
0.00447802 standard
0.0036066 standard
0.0253769 standard
0.0326729 standard
0.0967305 standard
0.0897958 standard
0.0719776 standard
0.129288 standard
0.164557 standard
0.12471 standard
0.166375 standard
0.0823866 standard
0.142442 standard
0.146789 standard
0.0950424 standard
0.175355 standard
0.136187 standard
0.165748 standard
0.119747 standard
0.0751138 standard
0.0979606 standard
0.0948148 standard
0.033312 standard
0.0263787 standard
0.0036222 standard
0.515726 standard
1.00001 standard
0.461636 standard
0.00367703 standard
0.0257133 standard
0.0328371 standard
0.100162 standard
0.0918536 standard
0.0661784 standard
0.128317 standard
0.16759 standard
0.122237 standard
0.171366 standard
0.081328 standard
0.0994358 standard
0.123521 standard
0.102211 standard
0.0794151 standard
0.177232 standard
0.12531 standard
0.180354 standard
0.122203 standard
0.0743493 standard
0.0990097 standard
0.0983954 standard
0.0334315 standard
0.0274028 standard
0.00315613 standard
0.519827 standard
1.0 standard
0.454622 standard
0.00323 standard
0.0264782 standard
0.0329649 standard
0.103751 standard
0.0923472 standard
0.0616027 standard
0.131569 standard
0.179308 standard
0.108603 standard
0.163609 standard
0.0680228 standard
0.083195 standard
0.076666 standard
0.0722275 standard
0.076762 standard
0.0861606 standard
0.0737246 standard
0.170164 standard
0.111969 standard
0.182273 standard
0.127 standard
0.0689103 standard
0.100438 standard
0.101852 standard
0.0333451 standard
0.0282078 standard
0.00272616 standard
0.52118 standard
1.00014 standard
0.451266 standard
0.00277204 standard
0.0294854 standard
0.0340411 standard
0.109333 standard
0.09947 standard
0.0584366 standard
0.148992 standard
0.181197 standard
0.108486 standard
0.161641 standard
0.085101 standard
0.0736168 standard
0.0612896 standard
0.0628159 standard
0.077032 standard
0.0971954 standard
0.169865 standard
0.114453 standard
0.181735 standard
0.141737 standard
0.0616834 standard
0.105401 standard
0.107024 standard
0.0348621 standard
0.0303727 standard
0.53252 standard
1.00028 standard
0.434804 standard
0.0296523 standard
0.0340571 standard
0.110317 standard
0.0981046 standard
0.0563086 standard
0.149058 standard
0.184278 standard
0.102473 standard
0.188723 standard
0.0756171 standard
0.0710837 standard
0.0560869 standard
0.0175241 standard
0.0164893 standard
0.0739269 standard
0.0717665 standard
0.192756 standard
0.107084 standard
0.184472 standard
0.144181 standard
0.0589385 standard
0.106286 standard
0.110845 standard
0.0345023 standard
0.0301106 standard
0.525871 standard
1.00009 standard
0.426045 standard
0.03003 standard
0.0338783 standard
0.109564 standard
0.100689 standard
0.0546065 standard
0.15158 standard
0.186806 standard
0.095376 standard
0.188747 standard
0.0576079 standard
0.032621 standard
0.0659077 standard
0.0494372 standard
0.012393 standard
0.067904 standard
0.0331052 standard
0.0612316 standard
0.189241 standard
0.0787574 standard
0.0987174 standard
0.183205 standard
0.146692 standard
0.057079 standard
0.10681 standard
0.109232 standard
0.0345864 standard
0.0308478 standard
0.527096 standard
1.00008 standard
0.421107 standard
0.031974 standard
0.0354153 standard
0.114232 standard
0.10634 standard
0.0533455 standard
0.157568 standard
0.189426 standard
0.0958144 standard
0.182038 standard
0.0661326 standard
0.0684096 standard
0.0544711 standard
0.0290417 standard
0.00732305 standard
0.00688504 standard
0.0281516 standard
0.0681431 standard
0.0731976 standard
0.180822 standard
0.084421 standard
0.0984471 standard
0.182297 standard
0.15254 standard
0.0554579 standard
0.112793 standard
0.112902 standard
0.03613 standard
0.0330713 standard
0.529691 standard
1.00002 standard
0.402927 standard
0.0354256 standard
0.0376877 standard
0.120106 standard
0.117696 standard
0.0528776 standard
0.159212 standard
0.196763 standard
0.0937913 standard
0.19602 standard
0.0542808 standard
0.0729047 standard
0.00506991 standard
0.00709435 standard
0.0073829 standard
0.00494611 standard
0.07305 standard
0.0593954 standard
0.183611 standard
0.0856498 standard
0.0961043 standard
0.183294 standard
0.157395 standard
0.0555112 standard
0.121956 standard
0.117797 standard
0.0394541 standard
0.0372545 standard
0.544793 standard
1.00001 standard
0.383561 standard
0.393087 standard
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