Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

D-Carnitine

Simulation outputs:

InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1/t6-/m1/s1 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.02326
Temperature 298 K
pH 7.4
InChI InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1/t6-/m1/s1
Note 1 Resolution of 25 too low, can't be fitted exactly.
Note 2 Oscar Li

Sample description:

Compound Type Concentration
D-Carnitine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

12 13 14 15 16 17 18 19 20 21 22 23 24 25
12 3.217 -12.4 0 0 0 0 0 0 0 0 0 0 0 0
13 0 3.217 0 0 0 0 0 0 0 0 0 0 0 0
14 0 0 3.217 0 0 0 0 0 0 0 0 0 0 0
15 0 0 0 3.217 0 -12.4 0 0 0 0 0 0 0 0
16 0 0 0 0 3.217 0 0 0 0 0 0 0 0 0
17 0 0 0 0 0 3.217 0 0 0 0 0 0 0 0
18 0 0 0 0 0 0 3.217 0 -12.4 0 0 0 0 0
19 0 0 0 0 0 0 0 3.217 0 0 0 0 0 0
20 0 0 0 0 0 0 0 0 3.217 0 0 0 0 0
21 0 0 0 0 0 0 0 0 0 2.408 -15.462 0 0 6.478
22 0 0 0 0 0 0 0 0 0 0 2.443 0 0 7.987
23 0 0 0 0 0 0 0 0 0 0 0 3.427 -14.339 9.204
24 0 0 0 0 0 0 0 0 0 0 0 0 3.415 2.284
25 0 0 0 0 0 0 0 0 0 0 0 0 0 4.558

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

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PPM Amplitude Peak Type
0.016508 standard
0.017905 standard
0.065744 standard
0.0659406 standard
0.0669576 standard
0.064449 standard
0.016821 standard
0.017604 standard
1.0 standard
0.00174384 standard
0.00857112 standard
0.137646 standard
0.0784242 standard
0.0762641 standard
0.00218833 standard
0.00816102 standard
0.000510062 standard
0.000893083 standard
0.00115604 standard
0.0106872 standard
0.011706 standard
0.0205931 standard
0.0213946 standard
0.0214449 standard
0.0205971 standard
0.011703 standard
0.0106791 standard
0.00117813 standard
0.000899125 standard
0.000510062 standard
0.137585 standard
0.17448 standard
1.0 standard
0.128299 standard
0.171697 standard
0.00512713 standard
0.00443213 standard
0.00273513 standard
0.00427812 standard
0.016512 standard
0.0232161 standard
0.0250943 standard
0.0333151 standard
0.0172391 standard
0.0167001 standard
0.0176251 standard
0.00741013 standard
0.000543125 standard
0.146054 standard
0.17036 standard
1.0 standard
0.131706 standard
0.156038 standard
0.00362213 standard
0.00365612 standard
0.00149812 standard
0.00350612 standard
0.014276 standard
0.024975 standard
0.0260591 standard
0.015897 standard
0.0395162 standard
0.016803 standard
0.0195974 standard
0.0199281 standard
0.008281 standard
0.000557125 standard
0.00211213 standard
0.146254 standard
0.15918 standard
0.00184512 standard
1.0 standard
0.13997 standard
0.142673 standard
0.00290412 standard
0.00345913 standard
0.00117612 standard
0.00316413 standard
0.013053 standard
0.0245552 standard
0.0259432 standard
0.0160071 standard
0.0406666 standard
0.016531 standard
0.0210891 standard
0.020417 standard
0.00880704 standard
0.000574125 standard
0.00229212 standard
0.144538 standard
0.151026 standard
0.001966 standard
1.0 standard
0.143572 standard
0.136982 standard
0.00265512 standard
0.00340613 standard
0.00113012 standard
0.00305312 standard
0.01275 standard
0.0237797 standard
0.0256622 standard
0.01611 standard
0.0398784 standard
0.016604 standard
0.021625 standard
0.0202432 standard
0.00900004 standard
0.000582125 standard
0.002495 standard
0.141817 standard
0.141045 standard
0.00214 standard
1.0 standard
0.146488 standard
0.131575 standard
0.00337904 standard
0.00106712 standard
0.012527 standard
0.0229736 standard
0.0253512 standard
0.016246 standard
0.0386918 standard
0.016694 standard
0.021784 standard
0.0201572 standard
0.00916402 standard
0.000566125 standard
0.00335706 standard
0.00526745 standard
0.0908399 standard
0.0917192 standard
0.0847862 standard
0.0849065 standard
0.00391687 standard
0.00476505 standard
1.0 standard
0.00456925 standard
0.159097 standard
0.100499 standard
0.100633 standard
0.00384806 standard
0.000788042 standard
0.011153 standard
0.0151624 standard
0.0217392 standard
0.026968 standard
0.0203132 standard
0.0181862 standard
0.0148303 standard
0.010309 standard
0.000675125 standard
0.00671301 standard
0.0086891 standard
0.0781149 standard
0.0792948 standard
0.076853 standard
0.0754551 standard
0.00718122 standard
0.00826601 standard
1.0 standard
0.00513844 standard
0.161673 standard
0.0893051 standard
0.0889924 standard
0.00477202 standard
0.000663042 standard
0.010979 standard
0.0132638 standard
0.0228929 standard
0.0232824 standard
0.0210901 standard
0.0213221 standard
0.023849 standard
0.0223853 standard
0.0131514 standard
0.010424 standard
0.000642042 standard
0.010266 standard
0.0120971 standard
0.0726593 standard
0.07962 standard
0.0781332 standard
0.0707871 standard
0.0106641 standard
0.011736 standard
1.0 standard
0.0061743 standard
0.162543 standard
0.0834529 standard
0.0822379 standard
0.00579302 standard
0.000613025 standard
0.0108931 standard
0.012737 standard
0.0239482 standard
0.0244138 standard
0.0191895 standard
0.0191221 standard
0.0246933 standard
0.0238073 standard
0.0124115 standard
0.0106761 standard
0.000614125 standard
0.013611 standard
0.015229 standard
0.0689531 standard
0.0882561 standard
0.0890778 standard
0.067425 standard
0.0139661 standard
0.014906 standard
1.0 standard
0.00735021 standard
0.158331 standard
0.080492 standard
0.0788534 standard
0.00690401 standard
0.000564083 standard
0.0106921 standard
0.0120547 standard
0.0223844 standard
0.0228022 standard
0.0228032 standard
0.0223835 standard
0.0120547 standard
0.0106921 standard
0.000564083 standard
0.016505 standard
0.017902 standard
0.065748 standard
0.0659456 standard
0.0669616 standard
0.064452 standard
0.016818 standard
0.017601 standard
1.0 standard
0.00174378 standard
0.00857012 standard
0.137657 standard
0.0784272 standard
0.0762671 standard
0.00218845 standard
0.00816001 standard
0.000510062 standard
0.000893083 standard
0.00115612 standard
0.0106872 standard
0.011706 standard
0.0205961 standard
0.0213967 standard
0.0214479 standard
0.0206001 standard
0.0117031 standard
0.0106792 standard
0.00117825 standard
0.000900083 standard
0.00051105 standard
0.018996 standard
0.020195 standard
0.063155 standard
0.062515 standard
0.063359 standard
0.062066 standard
0.019282 standard
0.019911 standard
1.0 standard
0.00261059 standard
0.00980207 standard
0.112039 standard
0.112476 standard
0.0771141 standard
0.0742648 standard
0.00302141 standard
0.00941701 standard
0.00045705 standard
0.000761562 standard
0.000973333 standard
0.0106882 standard
0.0114641 standard
0.0204591 standard
0.021923 standard
0.0211237 standard
0.0212766 standard
0.0114339 standard
0.0106962 standard
0.000961562 standard
0.000769 standard
0.00045705 standard
0.020098 standard
0.021209 standard
0.062032 standard
0.061321 standard
0.062079 standard
0.061018 standard
0.020367 standard
0.020932 standard
1.0 standard
0.00309958 standard
0.010416 standard
0.101565 standard
0.102446 standard
0.0767141 standard
0.0733785 standard
0.00350614 standard
0.010039 standard
0.00043005 standard
0.000710446 standard
0.00087 standard
0.0107022 standard
0.0113621 standard
0.0157061 standard
0.021375 standard
0.0221813 standard
0.0219437 standard
0.0160641 standard
0.0216042 standard
0.0113645 standard
0.0106932 standard
0.000883014 standard
0.000716347 standard
0.00043105 standard
0.021107 standard
0.022144 standard
0.060991 standard
0.060267 standard
0.060961 standard
0.060065 standard
0.021372 standard
0.021869 standard
1.0 standard
0.00364061 standard
0.011025 standard
0.0965496 standard
0.0978332 standard
0.0765077 standard
0.0725494 standard
0.00402703 standard
0.010653 standard
0.000406042 standard
0.000659125 standard
0.000791347 standard
0.0107073 standard
0.0113054 standard
0.0159808 standard
0.0220341 standard
0.0163755 standard
0.0225199 standard
0.0222966 standard
0.0158041 standard
0.0218148 standard
0.0153857 standard
0.0112922 standard
0.0107042 standard
0.000803125 standard
0.00066425 standard
0.000406102 standard
0.0229 standard
0.023802 standard
0.059178 standard
0.058492 standard
0.059055 standard
0.058375 standard
0.023139 standard
0.023532 standard
1.0 standard
0.00480159 standard
0.012222 standard
0.0874484 standard
0.0907415 standard
0.0775381 standard
0.0709982 standard
0.00514467 standard
0.011853 standard
0.000358042 standard
0.000566014 standard
0.000670125 standard
0.0107353 standard
0.0112189 standard
0.0146653 standard
0.0230301 standard
0.0154772 standard
0.0230831 standard
0.0230831 standard
0.0154782 standard
0.0230298 standard
0.0146653 standard
0.0112189 standard
0.0107353 standard
0.000670375 standard
0.000566014 standard
0.000358042 standard
0.023688 standard
0.024536 standard
0.058365 standard
0.057708 standard
0.058225 standard
0.057625 standard
0.023929 standard
0.024272 standard
1.0 standard
0.0054156 standard
0.012804 standard
0.0846535 standard
0.0899299 standard
0.0791914 standard
0.0702941 standard
0.00574663 standard
0.012439 standard
0.000336042 standard
0.000527125 standard
0.00061492 standard
0.0107314 standard
0.0112009 standard
0.0147791 standard
0.0231034 standard
0.0153743 standard
0.023362 standard
0.023362 standard
0.0153743 standard
0.0231034 standard
0.0147791 standard
0.0112009 standard
0.0107314 standard
0.000614667 standard
0.000527125 standard
0.000336042 standard
0.024423 standard
0.025216 standard
0.057629 standard
0.057004 standard
0.057467 standard
0.056934 standard
0.024654 standard
0.024954 standard
1.0 standard
0.00605865 standard
0.013389 standard
0.0824481 standard
0.090661 standard
0.0818247 standard
0.0696091 standard
0.00635256 standard
0.013009 standard
0.000315087 standard
0.00048445 standard
0.000563667 standard
0.0107524 standard
0.0111827 standard
0.0142435 standard
0.0231512 standard
0.0150481 standard
0.0232835 standard
0.0232835 standard
0.0150481 standard
0.0231512 standard
0.0142435 standard
0.0111827 standard
0.0107524 standard
0.000563667 standard
0.00048445 standard
0.000315036 standard
0.025778 standard
0.026488 standard
0.056413 standard
0.055844 standard
0.056224 standard
0.055801 standard
0.025996 standard
0.026222 standard
1.0 standard
0.00738379 standard
0.014534 standard
0.0794095 standard
0.110062 standard
0.0684601 standard
0.00763851 standard
0.014142 standard
0.0107514 standard
0.0111876 standard
0.0139753 standard
0.0230302 standard
0.0153978 standard
0.0232015 standard
0.0232896 standard
0.0151742 standard
0.0230106 standard
0.0139677 standard
0.0111856 standard
0.0107504 standard
0.027876 standard
0.028451 standard
0.054265 standard
0.053799 standard
0.054045 standard
0.053778 standard
0.028087 standard
0.028201 standard
1.0 standard
0.00996375 standard
0.016612 standard
0.0754819 standard
0.0894359 standard
0.0930745 standard
0.066166 standard
0.0101313 standard
0.016185 standard
0.0107885 standard
0.0111642 standard
0.0137978 standard
0.022492 standard
0.0154373 standard
0.0221329 standard
0.0209107 standard
0.0153018 standard
0.022477 standard
0.0138133 standard
0.0112073 standard
0.0107975 standard
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