Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Agmatine

Simulation outputs:

InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9) Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.01556
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9)
Note 1 Copied from spin matrix of bmse000063
Note 2 Oscar Li

Sample description:

Compound Type Concentration
agmatine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 14 15 16 17
10 1.739 -10.298 7.409 7.186 7.069 6.703 0 0
11 0 1.724 3.407 7.071 6.483 7.296 0 0
12 0 0 1.679 -13.218 0 0 8.087 4.602
13 0 0 0 1.666 0 0 8.86 8.629
14 0 0 0 0 3.23 -12.67 0 0
15 0 0 0 0 0 3.23 0 0
16 0 0 0 0 0 0 3.023 -16.146
17 0 0 0 0 0 0 0 3.023

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.00807202 standard
0.0192025 standard
0.054089 standard
0.119533 standard
0.16216 standard
0.128083 standard
0.208593 standard
0.257279 standard
0.331594 standard
0.205872 standard
0.372256 standard
0.207493 standard
0.0543148 standard
0.140315 standard
0.143739 standard
0.277416 standard
0.297215 standard
0.2188 standard
0.236641 standard
0.261947 standard
0.271888 standard
0.173905 standard
0.050318 standard
0.0303859 standard
0.00991185 standard
0.499227 standard
0.723428 standard
0.516687 standard
0.522876 standard
1.00008 standard
0.50556 standard
0.0175541 standard
0.0439291 standard
0.288026 standard
0.575615 standard
1.0 standard
0.66058 standard
0.530507 standard
0.078118 standard
0.0267361 standard
0.0321651 standard
0.306803 standard
0.711297 standard
0.806328 standard
0.196911 standard
0.217006 standard
0.021237 standard
0.052042 standard
0.0484571 standard
0.307934 standard
0.657479 standard
1.0 standard
0.738251 standard
0.452142 standard
0.0767244 standard
0.038389 standard
0.0212341 standard
0.0242721 standard
0.318956 standard
0.681402 standard
0.562682 standard
0.745885 standard
0.222811 standard
0.257073 standard
0.0258661 standard
0.060476 standard
0.320591 standard
0.769884 standard
1.0 standard
0.833668 standard
0.409903 standard
0.079664 standard
0.0361113 standard
0.019681 standard
0.021718 standard
0.349462 standard
0.716628 standard
0.201827 standard
0.360338 standard
0.457933 standard
0.778356 standard
0.291271 standard
0.0277691 standard
0.0655147 standard
0.196315 standard
0.853033 standard
1.0 standard
0.904954 standard
0.399458 standard
0.0788571 standard
0.0365781 standard
0.021607 standard
0.364626 standard
0.732029 standard
0.338054 standard
0.427182 standard
0.802243 standard
0.312285 standard
0.015348 standard
0.00884013 standard
0.029764 standard
0.0699446 standard
0.195616 standard
0.389213 standard
0.948926 standard
1.0 standard
0.993289 standard
0.260181 standard
0.0789891 standard
0.037799 standard
0.021856 standard
0.379134 standard
0.268117 standard
0.754521 standard
0.346833 standard
0.432735 standard
0.832991 standard
0.258314 standard
0.33529 standard
0.0229221 standard
0.0161481 standard
0.00987725 standard
0.0435539 standard
0.0824394 standard
0.207862 standard
0.205556 standard
0.358556 standard
0.518075 standard
0.698755 standard
0.728524 standard
0.797012 standard
0.722499 standard
0.599719 standard
0.208039 standard
0.261144 standard
0.083629 standard
0.0482046 standard
0.0196764 standard
0.447718 standard
0.870679 standard
0.476318 standard
0.0130911 standard
0.0126301 standard
0.517815 standard
1.00001 standard
0.45061 standard
0.016993 standard
0.010233 standard
0.00587122 standard
0.0107992 standard
0.0499317 standard
0.0852914 standard
0.203664 standard
0.201485 standard
0.354016 standard
0.359114 standard
0.505679 standard
0.458308 standard
0.465533 standard
0.584061 standard
0.438741 standard
0.19595 standard
0.238163 standard
0.14075 standard
0.087758 standard
0.051255 standard
0.00703508 standard
0.477989 standard
0.846244 standard
0.53676 standard
0.551351 standard
1.00005 standard
0.485688 standard
0.00945504 standard
0.00672168 standard
0.00884413 standard
0.014062 standard
0.0530093 standard
0.0863361 standard
0.187154 standard
0.197301 standard
0.366851 standard
0.253814 standard
0.442336 standard
0.185428 standard
0.403597 standard
0.480137 standard
0.382208 standard
0.215327 standard
0.190975 standard
0.155283 standard
0.0975823 standard
0.052007 standard
0.0212347 standard
0.007975 standard
0.004978 standard
0.495762 standard
0.823749 standard
0.553307 standard
0.565113 standard
1.00029 standard
0.503152 standard
0.00740464 standard
0.0163283 standard
0.0549508 standard
0.172377 standard
0.150771 standard
0.195779 standard
0.282818 standard
0.370325 standard
0.228528 standard
0.426316 standard
0.145828 standard
0.205676 standard
0.206975 standard
0.41645 standard
0.198628 standard
0.346005 standard
0.241977 standard
0.225055 standard
0.164309 standard
0.106766 standard
0.0518958 standard
0.0263982 standard
0.00895272 standard
0.490423 standard
0.774687 standard
0.541393 standard
0.544995 standard
1.00001 standard
0.497992 standard
0.00807402 standard
0.0192547 standard
0.0541253 standard
0.119314 standard
0.162055 standard
0.128183 standard
0.207805 standard
0.257189 standard
0.331729 standard
0.205878 standard
0.371794 standard
0.207496 standard
0.0543339 standard
0.140759 standard
0.143702 standard
0.277522 standard
0.297331 standard
0.218879 standard
0.236743 standard
0.262053 standard
0.271975 standard
0.173779 standard
0.0503272 standard
0.0304742 standard
0.00991385 standard
0.499346 standard
0.723638 standard
0.516807 standard
0.523293 standard
1.00006 standard
0.505637 standard
0.00900361 standard
0.021813 standard
0.0545991 standard
0.0358853 standard
0.140311 standard
0.159144 standard
0.116909 standard
0.267395 standard
0.275534 standard
0.21167 standard
0.289775 standard
0.30719 standard
0.187907 standard
0.0271197 standard
0.0311021 standard
0.0313235 standard
0.0412756 standard
0.122552 standard
0.141813 standard
0.236538 standard
0.289755 standard
0.217959 standard
0.333716 standard
0.200743 standard
0.0720052 standard
0.0504227 standard
0.0353813 standard
0.0111874 standard
0.501235 standard
0.682911 standard
0.511511 standard
0.517325 standard
1.00004 standard
0.50794 standard
0.00946565 standard
0.0228435 standard
0.0555979 standard
0.0383456 standard
0.162616 standard
0.114427 standard
0.299232 standard
0.235016 standard
0.253786 standard
0.220227 standard
0.276858 standard
0.282139 standard
0.177424 standard
0.0351992 standard
0.0272391 standard
0.0457215 standard
0.116548 standard
0.153652 standard
0.227853 standard
0.323691 standard
0.220816 standard
0.347845 standard
0.145756 standard
0.200651 standard
0.0734604 standard
0.0503024 standard
0.0379889 standard
0.0117552 standard
0.506194 standard
0.665611 standard
0.50797 standard
0.514732 standard
1.00044 standard
0.510273 standard
0.0099336 standard
0.0242373 standard
0.0565637 standard
0.0399244 standard
0.170138 standard
0.112222 standard
0.330099 standard
0.23829 standard
0.233514 standard
0.265865 standard
0.270749 standard
0.116441 standard
0.153043 standard
0.0467732 standard
0.0262839 standard
0.0303277 standard
0.026932 standard
0.044144 standard
0.114178 standard
0.158237 standard
0.225542 standard
0.344699 standard
0.220079 standard
0.35293 standard
0.186184 standard
0.0760613 standard
0.0506268 standard
0.0403097 standard
0.0123822 standard
0.502124 standard
0.651263 standard
0.50706 standard
0.51373 standard
1.00057 standard
0.506896 standard
0.010866 standard
0.0260914 standard
0.0569506 standard
0.0430356 standard
0.183237 standard
0.110693 standard
0.330611 standard
0.217447 standard
0.293006 standard
0.231807 standard
0.116857 standard
0.121976 standard
0.122843 standard
0.0463679 standard
0.0257919 standard
0.0178817 standard
0.0246696 standard
0.0242106 standard
0.0472113 standard
0.111744 standard
0.146307 standard
0.224352 standard
0.31015 standard
0.252292 standard
0.297789 standard
0.103128 standard
0.171437 standard
0.0815372 standard
0.0505633 standard
0.0451 standard
0.0135302 standard
0.50468 standard
0.616457 standard
0.503832 standard
0.510427 standard
1.00198 standard
0.509667 standard
0.0113425 standard
0.0267847 standard
0.057523 standard
0.0439215 standard
0.175695 standard
0.319789 standard
0.213851 standard
0.320509 standard
0.216781 standard
0.118917 standard
0.117786 standard
0.116993 standard
0.046544 standard
0.027302 standard
0.01756 standard
0.0132123 standard
0.0214474 standard
0.0244535 standard
0.0489693 standard
0.110831 standard
0.229403 standard
0.302605 standard
0.299908 standard
0.194176 standard
0.293128 standard
0.101085 standard
0.0934031 standard
0.170301 standard
0.0840726 standard
0.0507723 standard
0.047154 standard
0.0141106 standard
0.505231 standard
0.533836 standard
0.607807 standard
0.504646 standard
0.511071 standard
1.00272 standard
0.509649 standard
0.0118019 standard
0.0281601 standard
0.0582384 standard
0.045644 standard
0.163048 standard
0.315233 standard
0.211543 standard
0.334597 standard
0.212988 standard
0.122671 standard
0.119554 standard
0.113592 standard
0.0468048 standard
0.0293041 standard
0.0176175 standard
0.0125888 standard
0.0214036 standard
0.0249164 standard
0.0514429 standard
0.110838 standard
0.10355 standard
0.246213 standard
0.184295 standard
0.346163 standard
0.174204 standard
0.303423 standard
0.106296 standard
0.169057 standard
0.0866955 standard
0.0508767 standard
0.0495457 standard
0.0146493 standard
0.505287 standard
0.547672 standard
0.600886 standard
0.503793 standard
0.51083 standard
1.00262 standard
0.510066 standard
0.0126976 standard
0.0300366 standard
0.0591707 standard
0.0495575 standard
0.141578 standard
0.239895 standard
0.27192 standard
0.218221 standard
0.302969 standard
0.207741 standard
0.148334 standard
0.109637 standard
0.0480751 standard
0.033405 standard
0.0180178 standard
0.0131007 standard
0.021951 standard
0.0257847 standard
0.0548697 standard
0.113526 standard
0.102432 standard
0.266914 standard
0.170749 standard
0.337743 standard
0.177305 standard
0.274524 standard
0.131956 standard
0.16882 standard
0.0919824 standard
0.050972 standard
0.0542247 standard
0.0156859 standard
0.506655 standard
0.558802 standard
0.584986 standard
0.503118 standard
0.509949 standard
1.00191 standard
0.510025 standard
0.014358 standard
0.0340892 standard
0.05888 standard
0.0582142 standard
0.134051 standard
0.0872726 standard
0.237534 standard
0.167637 standard
0.324674 standard
0.203759 standard
0.203942 standard
0.143587 standard
0.106768 standard
0.0503644 standard
0.0396175 standard
0.0199057 standard
0.0150054 standard
0.023504 standard
0.0275127 standard
0.0607834 standard
0.114592 standard
0.10669 standard
0.215679 standard
0.191494 standard
0.191797 standard
0.286331 standard
0.104257 standard
0.290185 standard
0.0992637 standard
0.169132 standard
0.102543 standard
0.0510821 standard
0.0613503 standard
0.0175433 standard
0.505191 standard
0.565539 standard
0.573165 standard
0.504509 standard
0.511449 standard
1.00088 standard
0.508505 standard
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