Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

D-Ornithine

Simulation outputs:

InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.01580
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1
Note 1 Oscar Li

Sample description:

Compound Type Concentration
D-Ornithine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 14 15 16
10 1.83 -14.02 5.81 3.025 6.868 7.973 0
11 0 1.741 10.969 5.867 4.025 11.279 0
12 0 0 1.95 -16.136 0 0 6.514
13 0 0 0 1.921 0 0 5.947
14 0 0 0 0 3.04 -11.534 0
15 0 0 0 0 0 3.04 0
16 0 0 0 0 0 0 3.774

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

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PPM Amplitude Peak Type
0.00416211 standard
0.0251052 standard
0.0506024 standard
0.0396294 standard
0.0948201 standard
0.0634106 standard
0.071161 standard
0.11905 standard
0.117023 standard
0.10503 standard
0.134554 standard
0.0611618 standard
0.11 standard
0.0546409 standard
0.00978903 standard
0.0447652 standard
0.0558661 standard
0.0707442 standard
0.1003 standard
0.0918591 standard
0.108628 standard
0.120555 standard
0.101808 standard
0.131419 standard
0.0948366 standard
0.0981337 standard
0.072351 standard
0.0736607 standard
0.0432816 standard
0.03664 standard
0.0347357 standard
0.0220015 standard
0.0287171 standard
0.049 standard
0.0574922 standard
0.0442846 standard
0.175781 standard
0.244044 standard
0.299311 standard
0.370931 standard
0.206006 standard
0.246795 standard
0.190028 standard
0.13184 standard
0.0367774 standard
0.0338355 standard
0.0392725 standard
0.024893 standard
0.0128228 standard
0.466496 standard
1.00014 standard
0.43392 standard
0.0130751 standard
0.278562 standard
0.516859 standard
0.27825 standard
0.0187511 standard
0.0561901 standard
0.133778 standard
0.256497 standard
0.502925 standard
1.0 standard
0.871865 standard
0.84995 standard
0.119751 standard
0.049388 standard
0.0117381 standard
0.0273431 standard
0.0255151 standard
0.42464 standard
0.608168 standard
0.228581 standard
0.141215 standard
0.0172711 standard
0.209184 standard
0.373453 standard
0.139798 standard
0.0273281 standard
0.0873971 standard
0.149158 standard
0.150032 standard
0.289976 standard
0.841448 standard
1.0 standard
0.668232 standard
0.521601 standard
0.126796 standard
0.141943 standard
0.0585652 standard
0.0132131 standard
0.0203151 standard
0.0207391 standard
0.0185681 standard
0.46083 standard
0.713009 standard
0.297823 standard
0.00938812 standard
0.00748112 standard
0.249341 standard
0.433853 standard
0.183563 standard
0.00554612 standard
0.009334 standard
0.00845512 standard
0.0100241 standard
0.033371 standard
0.107257 standard
0.146505 standard
0.258875 standard
0.301727 standard
0.525314 standard
0.631684 standard
1.00001 standard
0.744633 standard
0.459239 standard
0.147145 standard
0.0646484 standard
0.00637312 standard
0.0158581 standard
0.0160581 standard
0.0155851 standard
0.450989 standard
0.763462 standard
0.33942 standard
0.00759613 standard
0.254602 standard
0.440946 standard
0.195601 standard
0.00767713 standard
0.01472 standard
0.014385 standard
0.0471273 standard
0.0324871 standard
0.140496 standard
0.187651 standard
0.336838 standard
0.339022 standard
0.577968 standard
0.800924 standard
0.995684 standard
0.943155 standard
0.569377 standard
0.165633 standard
0.20122 standard
0.0842583 standard
0.0186991 standard
0.0174621 standard
0.573867 standard
1.00001 standard
0.456886 standard
0.00870212 standard
0.330282 standard
0.565602 standard
0.25748 standard
0.00801425 standard
0.0155202 standard
0.015142 standard
0.050967 standard
0.0329741 standard
0.134198 standard
0.117928 standard
0.179441 standard
0.203052 standard
0.333104 standard
0.285687 standard
0.511536 standard
0.462753 standard
0.716457 standard
0.780549 standard
0.877699 standard
0.648455 standard
0.553241 standard
0.197189 standard
0.084267 standard
0.00981213 standard
0.0160744 standard
0.01535 standard
0.546695 standard
1.0 standard
0.458802 standard
0.319746 standard
0.549244 standard
0.260516 standard
0.012507 standard
0.0272408 standard
0.023336 standard
0.062977 standard
0.045552 standard
0.111699 standard
0.106259 standard
0.147371 standard
0.237941 standard
0.166038 standard
0.296858 standard
0.198736 standard
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0.140306 standard
0.143992 standard
0.385161 standard
0.520927 standard
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0.0965263 standard
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1.00002 standard
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0.278342 standard
0.526315 standard
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0.00331025 standard
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0.0364567 standard
0.02968 standard
0.0756289 standard
0.055009 standard
0.11625 standard
0.106302 standard
0.118304 standard
0.155083 standard
0.0927251 standard
0.212163 standard
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0.195189 standard
0.149474 standard
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0.109484 standard
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0.107398 standard
0.0619073 standard
0.0714361 standard
0.0585205 standard
0.0769896 standard
0.385184 standard
0.213486 standard
0.514267 standard
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0.26505 standard
0.277449 standard
0.10803 standard
0.0198843 standard
0.0169406 standard
0.0182762 standard
0.0123776 standard
0.0133834 standard
0.474357 standard
1.00008 standard
0.407216 standard
0.011844 standard
0.275167 standard
0.531446 standard
0.272636 standard
0.00367956 standard
0.020216 standard
0.043076 standard
0.0345645 standard
0.084305 standard
0.0621465 standard
0.118816 standard
0.110662 standard
0.112435 standard
0.14304 standard
0.0670487 standard
0.133863 standard
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0.117614 standard
0.0256925 standard
0.0226395 standard
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0.016829 standard
0.013046 standard
0.475197 standard
1.0 standard
0.419157 standard
0.0126884 standard
0.277826 standard
0.531089 standard
0.277108 standard
0.00398878 standard
0.0232515 standard
0.0480061 standard
0.0377323 standard
0.0915819 standard
0.0620013 standard
0.0679224 standard
0.119382 standard
0.116015 standard
0.108332 standard
0.138387 standard
0.0633444 standard
0.117745 standard
0.0607086 standard
0.0511017 standard
0.0596003 standard
0.0732935 standard
0.102225 standard
0.0958338 standard
0.112081 standard
0.123742 standard
0.136518 standard
0.093633 standard
0.0989955 standard
0.0693899 standard
0.0708289 standard
0.0410153 standard
0.0356921 standard
0.0347983 standard
0.0176577 standard
0.0241573 standard
0.0398164 standard
0.0495691 standard
0.042323 standard
0.194318 standard
0.273068 standard
0.307498 standard
0.407898 standard
0.263872 standard
0.212678 standard
0.195012 standard
0.125438 standard
0.0314848 standard
0.0285161 standard
0.0327808 standard
0.0210397 standard
0.0128184 standard
0.469327 standard
1.00061 standard
0.427579 standard
0.0130559 standard
0.278605 standard
0.524579 standard
0.278557 standard
0.00416322 standard
0.0251043 standard
0.05059 standard
0.0396354 standard
0.0948675 standard
0.0630595 standard
0.0709131 standard
0.119048 standard
0.117028 standard
0.105037 standard
0.134577 standard
0.0611708 standard
0.110014 standard
0.0546459 standard
0.00979101 standard
0.0447682 standard
0.0558722 standard
0.0707561 standard
0.100313 standard
0.0918761 standard
0.108644 standard
0.120571 standard
0.101827 standard
0.131435 standard
0.0947826 standard
0.0986883 standard
0.0723698 standard
0.0736637 standard
0.0432807 standard
0.0366146 standard
0.0347324 standard
0.0219742 standard
0.0287053 standard
0.0489904 standard
0.0574861 standard
0.0442862 standard
0.175796 standard
0.244093 standard
0.299352 standard
0.370977 standard
0.206052 standard
0.246831 standard
0.190036 standard
0.13176 standard
0.0367984 standard
0.0338406 standard
0.0390119 standard
0.024892 standard
0.0128279 standard
0.463672 standard
1.00014 standard
0.43395 standard
0.013077 standard
0.27856 standard
0.516858 standard
0.278287 standard
0.00435256 standard
0.0265476 standard
0.0448371 standard
0.053404 standard
0.0412089 standard
0.0969783 standard
0.063504 standard
0.0744598 standard
0.117622 standard
0.117691 standard
0.101676 standard
0.0830847 standard
0.131767 standard
0.0597745 standard
0.103604 standard
0.0515646 standard
0.00843779 standard
0.0437959 standard
0.0541748 standard
0.0689386 standard
0.0998239 standard
0.0906569 standard
0.105341 standard
0.119189 standard
0.101651 standard
0.130015 standard
0.0964061 standard
0.0987621 standard
0.0748144 standard
0.0759941 standard
0.0456049 standard
0.0374323 standard
0.0351624 standard
0.0267337 standard
0.0334623 standard
0.0580887 standard
0.0648383 standard
0.0471445 standard
0.16541 standard
0.15367 standard
0.370611 standard
0.256337 standard
0.32321 standard
0.160797 standard
0.174909 standard
0.162954 standard
0.190739 standard
0.13656 standard
0.0419593 standard
0.0392154 standard
0.045753 standard
0.0284255 standard
0.0128319 standard
0.461738 standard
1.00008 standard
0.435472 standard
0.0131195 standard
0.278984 standard
0.510734 standard
0.278831 standard
0.00440514 standard
0.0271397 standard
0.0456658 standard
0.0545771 standard
0.0419828 standard
0.0967607 standard
0.063717 standard
0.0748131 standard
0.118282 standard
0.117475 standard
0.100832 standard
0.0822987 standard
0.129187 standard
0.059328 standard
0.100408 standard
0.0504099 standard
0.008113 standard
0.0435324 standard
0.0532236 standard
0.0687139 standard
0.0993399 standard
0.0885112 standard
0.104704 standard
0.118804 standard
0.100846 standard
0.128856 standard
0.096645 standard
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0.0991259 standard
0.0760538 standard
0.0771644 standard
0.0462513 standard
0.0378768 standard
0.0353276 standard
0.0289971 standard
0.0357 standard
0.0622959 standard
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0.162241 standard
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0.283374 standard
0.233203 standard
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0.250087 standard
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0.189075 standard
0.13797 standard
0.0439821 standard
0.0412754 standard
0.0483971 standard
0.0299757 standard
0.0128156 standard
0.464872 standard
1.0 standard
0.433314 standard
0.0131282 standard
0.278551 standard
0.509036 standard
0.278803 standard
0.00449606 standard
0.0278182 standard
0.0456561 standard
0.0560248 standard
0.0428088 standard
0.0989725 standard
0.0644952 standard
0.076426 standard
0.117758 standard
0.119039 standard
0.101232 standard
0.0814561 standard
0.129353 standard
0.0591278 standard
0.0990386 standard
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0.00784418 standard
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0.0681251 standard
0.0994184 standard
0.0890323 standard
0.104187 standard
0.119055 standard
0.100838 standard
0.12911 standard
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0.101006 standard
0.0764502 standard
0.0776866 standard
0.0472531 standard
0.0383793 standard
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0.0664046 standard
0.0728007 standard
0.0501988 standard
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0.319801 standard
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0.189876 standard
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0.0316867 standard
0.012902 standard
0.466419 standard
1.0 standard
0.438443 standard
0.0132235 standard
0.280229 standard
0.506578 standard
0.279653 standard
0.00459813 standard
0.0287698 standard
0.0471472 standard
0.0573342 standard
0.0440413 standard
0.0998014 standard
0.0644226 standard
0.0777768 standard
0.117818 standard
0.118671 standard
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0.127011 standard
0.0584311 standard
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0.00748978 standard
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0.0996641 standard
0.0998051 standard
0.102116 standard
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0.0480876 standard
0.0390038 standard
0.0360221 standard
0.035225 standard
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0.0741869 standard
0.0790149 standard
0.0528494 standard
0.150865 standard
0.137322 standard
0.246388 standard
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0.160808 standard
0.21173 standard
0.145175 standard
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0.0504376 standard
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1.00004 standard
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0.0132354 standard
0.279408 standard
0.511345 standard
0.280211 standard
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0.0457232 standard
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0.0981953 standard
0.0642475 standard
0.0777238 standard
0.115654 standard
0.115888 standard
0.0982949 standard
0.0776684 standard
0.124307 standard
0.0573794 standard
0.092174 standard
0.0671525 standard
0.0470061 standard
0.00740017 standard
0.0422841 standard
0.0509156 standard
0.0674027 standard
0.0982501 standard
0.0860247 standard
0.0993265 standard
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0.126127 standard
0.10094 standard
0.100716 standard
0.078182 standard
0.0599214 standard
0.0789666 standard
0.0490555 standard
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0.0358206 standard
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0.0759826 standard
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0.0533201 standard
0.14701 standard
0.134493 standard
0.238346 standard
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0.24456 standard
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1.0 standard
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0.067444 standard
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0.102 standard
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0.186677 standard
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0.0536527 standard
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0.0601849 standard
0.0366528 standard
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0.475461 standard
1.0 standard
0.436415 standard
0.0132013 standard
0.278684 standard
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0.00469561 standard
0.0303558 standard
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0.185226 standard
0.146163 standard
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0.0550953 standard
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0.0392487 standard
0.0129352 standard
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1.00011 standard
0.436556 standard
0.0133703 standard
0.282165 standard
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0.0313612 standard
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0.012869 standard
0.470991 standard
1.00417 standard
0.444487 standard
0.0133172 standard
0.281628 standard
0.502509 standard
0.281642 standard
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