Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

R-(+)-2-Pyrrolidinone-5-carboxylate

Simulation outputs:

InChI=1S/C5H7NO3/c7-4-2-1-3(6-4)5(8)9/h3H,1-2H2,(H,6,7)(H,8,9)/t3-/m1/s1 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.01307
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H7NO3/c7-4-2-1-3(6-4)5(8)9/h3H,1-2H2,(H,6,7)(H,8,9)/t3-/m1/s1
Note 1 Copied from spin matrix of bmse000483
Note 2 483 already fitted. Had to optimize the chemical shift and some coupling.
Note 3 Oscar Li

Sample description:

Compound Type Concentration
Pyroglutamate Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 14
10 2.023 -13.203 11.613 5.07 5.923
11 0 2.5 7.472 9.51 9.232
12 0 0 2.395 -17.219 0
13 0 0 0 2.393 0
14 0 0 0 0 4.169

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.00486812 standard
0.0810121 standard
0.0983674 standard
0.171626 standard
0.19814 standard
0.121226 standard
0.124392 standard
0.144282 standard
0.18427 standard
0.127131 standard
0.13386 standard
0.122525 standard
0.0998689 standard
0.00484819 standard
0.013337 standard
0.597335 standard
1.00035 standard
0.76642 standard
0.0174951 standard
0.125832 standard
0.128592 standard
0.212651 standard
0.123235 standard
0.178506 standard
0.13122 standard
0.220293 standard
0.0840767 standard
0.184451 standard
0.0677758 standard
0.344222 standard
0.361382 standard
0.362509 standard
0.343728 standard
0.00641412 standard
0.0117161 standard
0.0131391 standard
0.0111111 standard
0.035442 standard
0.043735 standard
0.0256731 standard
0.0578061 standard
0.0872271 standard
0.0855371 standard
0.0768293 standard
0.203701 standard
0.887392 standard
0.655036 standard
1.0 standard
0.185838 standard
0.0924431 standard
0.0737693 standard
0.0391891 standard
0.0120791 standard
0.00954913 standard
0.0185061 standard
0.0332453 standard
0.121657 standard
0.144976 standard
0.169295 standard
0.204595 standard
0.217813 standard
0.218317 standard
0.164576 standard
0.111989 standard
0.0123711 standard
0.00568412 standard
0.00939125 standard
0.00636312 standard
0.013385 standard
0.0109261 standard
0.0218383 standard
0.057172 standard
0.056977 standard
0.14171 standard
0.17778 standard
0.0963542 standard
0.148492 standard
0.34577 standard
0.5604 standard
1.0 standard
0.526694 standard
0.171384 standard
0.119553 standard
0.0403811 standard
0.06423 standard
0.0630681 standard
0.0236613 standard
0.00712213 standard
0.0125521 standard
0.0283083 standard
0.131222 standard
0.133731 standard
0.142575 standard
0.175133 standard
0.268005 standard
0.19905 standard
0.128246 standard
0.00979812 standard
0.00782213 standard
0.015361 standard
0.0106143 standard
0.0202701 standard
0.0912047 standard
0.0888143 standard
0.0860892 standard
0.141345 standard
0.179577 standard
0.182036 standard
0.181289 standard
0.0807371 standard
0.161605 standard
0.16483 standard
0.143477 standard
0.619713 standard
0.28933 standard
1.0 standard
0.453564 standard
0.820164 standard
0.113171 standard
0.176793 standard
0.128132 standard
0.0193432 standard
0.0308431 standard
0.0364914 standard
0.220661 standard
0.160573 standard
0.164709 standard
0.152052 standard
0.42921 standard
0.225564 standard
0.176074 standard
0.015726 standard
0.016657 standard
0.0115731 standard
0.0211452 standard
0.120294 standard
0.112423 standard
0.0964421 standard
0.13721 standard
0.186913 standard
0.104061 standard
0.238364 standard
0.105095 standard
0.116127 standard
0.156704 standard
0.0995961 standard
0.130266 standard
0.497585 standard
0.504483 standard
0.153443 standard
1.0 standard
0.536381 standard
0.512731 standard
0.773241 standard
0.784766 standard
0.110247 standard
0.188818 standard
0.129119 standard
0.0334166 standard
0.0167162 standard
0.0381921 standard
0.212159 standard
0.210698 standard
0.22367 standard
0.481214 standard
0.227295 standard
0.183408 standard
0.01663 standard
0.0182311 standard
0.012632 standard
0.0220961 standard
0.142792 standard
0.115307 standard
0.122274 standard
0.127578 standard
0.19429 standard
0.12152 standard
0.115621 standard
0.225918 standard
0.128994 standard
0.131682 standard
0.159147 standard
0.117485 standard
0.0434402 standard
0.544864 standard
1.0 standard
0.547171 standard
0.674542 standard
0.8118 standard
0.254367 standard
0.110543 standard
0.203999 standard
0.0468255 standard
0.131181 standard
0.0429456 standard
0.038739 standard
0.26709 standard
0.259176 standard
0.507908 standard
0.215177 standard
0.192237 standard
0.0165922 standard
0.0127573 standard
0.00762216 standard
0.0706481 standard
0.138153 standard
0.115677 standard
0.138418 standard
0.193601 standard
0.227227 standard
0.127815 standard
0.236426 standard
0.143914 standard
0.212884 standard
0.142247 standard
0.0138768 standard
0.016527 standard
0.0242154 standard
0.0129979 standard
0.010904 standard
0.551875 standard
1.0 standard
0.246712 standard
0.892902 standard
0.983689 standard
0.212445 standard
0.26791 standard
0.206404 standard
0.167574 standard
0.274345 standard
0.0652006 standard
0.160547 standard
0.0595022 standard
0.0214201 standard
0.39659 standard
0.27562 standard
0.249789 standard
0.45514 standard
0.16024 standard
0.242577 standard
0.01088 standard
0.0803581 standard
0.106847 standard
0.164095 standard
0.148545 standard
0.20802 standard
0.150126 standard
0.211706 standard
0.212296 standard
0.134019 standard
0.193543 standard
0.12789 standard
0.0115736 standard
0.00677792 standard
0.00565038 standard
0.0162621 standard
0.588018 standard
1.00003 standard
0.92723 standard
0.227771 standard
0.138202 standard
0.211921 standard
0.180337 standard
0.143576 standard
0.244783 standard
0.0768722 standard
0.177731 standard
0.064715 standard
0.390812 standard
0.352133 standard
0.418765 standard
0.331067 standard
0.00524667 standard
0.082765 standard
0.102187 standard
0.175493 standard
0.206729 standard
0.136219 standard
0.153093 standard
0.158893 standard
0.195264 standard
0.1297 standard
0.149335 standard
0.148887 standard
0.114462 standard
0.00961378 standard
0.00601015 standard
0.0139413 standard
0.015642 standard
0.593581 standard
1.00007 standard
0.86424 standard
0.0192982 standard
0.171906 standard
0.128514 standard
0.197922 standard
0.146676 standard
0.156275 standard
0.132058 standard
0.233577 standard
0.0815366 standard
0.181544 standard
0.0665898 standard
0.372809 standard
0.377734 standard
0.394957 standard
0.359215 standard
0.00502096 standard
0.0819574 standard
0.0998999 standard
0.175091 standard
0.20094 standard
0.127757 standard
0.132668 standard
0.147227 standard
0.184844 standard
0.127174 standard
0.1384 standard
0.132385 standard
0.105319 standard
0.00904108 standard
0.00503513 standard
0.012388 standard
0.592144 standard
1.00042 standard
0.802904 standard
0.0179632 standard
0.141754 standard
0.126007 standard
0.207453 standard
0.131742 standard
0.169511 standard
0.129136 standard
0.224355 standard
0.0829093 standard
0.183141 standard
0.0670478 standard
0.355169 standard
0.369564 standard
0.374779 standard
0.350467 standard
0.00485213 standard
0.0810101 standard
0.0983724 standard
0.171627 standard
0.198149 standard
0.121237 standard
0.124405 standard
0.1443 standard
0.18428 standard
0.127191 standard
0.133887 standard
0.122538 standard
0.0998719 standard
0.004849 standard
0.0132731 standard
0.012374 standard
0.592409 standard
1.00035 standard
0.766149 standard
0.017515 standard
0.125858 standard
0.126522 standard
0.21188 standard
0.123207 standard
0.178502 standard
0.131229 standard
0.220305 standard
0.0840766 standard
0.184456 standard
0.0677728 standard
0.345031 standard
0.361357 standard
0.362504 standard
0.343723 standard
0.0047468 standard
0.0800448 standard
0.0966693 standard
0.168181 standard
0.195045 standard
0.117904 standard
0.120574 standard
0.143872 standard
0.17856 standard
0.123253 standard
0.129566 standard
0.117889 standard
0.0958238 standard
0.00469702 standard
0.0129016 standard
0.595287 standard
1.00057 standard
0.733554 standard
0.0144202 standard
0.11564 standard
0.128595 standard
0.210381 standard
0.117307 standard
0.179884 standard
0.131196 standard
0.216228 standard
0.0845372 standard
0.185553 standard
0.0682587 standard
0.336349 standard
0.353543 standard
0.354294 standard
0.335318 standard
0.004694 standard
0.0796568 standard
0.0959034 standard
0.166632 standard
0.193556 standard
0.116776 standard
0.118857 standard
0.141515 standard
0.178304 standard
0.123497 standard
0.128188 standard
0.114061 standard
0.0941818 standard
0.004636 standard
0.0130409 standard
0.593073 standard
1.00004 standard
0.719667 standard
0.0142409 standard
0.111947 standard
0.131615 standard
0.208092 standard
0.114929 standard
0.180821 standard
0.133017 standard
0.208099 standard
0.0847541 standard
0.18955 standard
0.0684127 standard
0.333582 standard
0.349355 standard
0.349402 standard
0.333044 standard
0.00468269 standard
0.0798757 standard
0.0958779 standard
0.166693 standard
0.19481 standard
0.116215 standard
0.119337 standard
0.143912 standard
0.177033 standard
0.125969 standard
0.129771 standard
0.11134 standard
0.0919429 standard
0.00460211 standard
0.0132467 standard
0.592502 standard
1.0004 standard
0.713021 standard
0.0141961 standard
0.109545 standard
0.131119 standard
0.207663 standard
0.113607 standard
0.182646 standard
0.135724 standard
0.210181 standard
0.0856627 standard
0.188508 standard
0.0691057 standard
0.332811 standard
0.349537 standard
0.349591 standard
0.332041 standard
0.00443301 standard
0.0798057 standard
0.0960785 standard
0.164168 standard
0.193079 standard
0.115856 standard
0.118761 standard
0.139857 standard
0.174162 standard
0.122126 standard
0.125742 standard
0.109906 standard
0.0903487 standard
0.0047189 standard
0.0136242 standard
0.604238 standard
1.00001 standard
0.697446 standard
0.01452 standard
0.105069 standard
0.205913 standard
0.111142 standard
0.18371 standard
0.211284 standard
0.0864713 standard
0.187638 standard
0.0698857 standard
0.33006 standard
0.346116 standard
0.346111 standard
0.330061 standard
0.004454 standard
0.0802958 standard
0.0961688 standard
0.164077 standard
0.194223 standard
0.115861 standard
0.117625 standard
0.140233 standard
0.178528 standard
0.11915 standard
0.124434 standard
0.111074 standard
0.0903138 standard
0.00469688 standard
0.0138295 standard
0.605444 standard
1.00014 standard
0.69104 standard
0.0146933 standard
0.103874 standard
0.20505 standard
0.110603 standard
0.18582 standard
0.214163 standard
0.0873072 standard
0.197151 standard
0.0706317 standard
0.330654 standard
0.346824 standard
0.346896 standard
0.329567 standard
0.00439681 standard
0.0792496 standard
0.0958378 standard
0.1615 standard
0.188239 standard
0.114365 standard
0.11595 standard
0.13956 standard
0.175078 standard
0.122297 standard
0.126018 standard
0.108098 standard
0.0886797 standard
0.00462403 standard
0.0138431 standard
0.595605 standard
1.0001 standard
0.676911 standard
0.014589 standard
0.10111 standard
0.201722 standard
0.108412 standard
0.184608 standard
0.20779 standard
0.0865067 standard
0.191822 standard
0.0700607 standard
0.32569 standard
0.341865 standard
0.341936 standard
0.324491 standard
0.00471673 standard
0.0806538 standard
0.0974673 standard
0.164311 standard
0.194641 standard
0.115047 standard
0.118267 standard
0.140074 standard
0.173561 standard
0.119214 standard
0.123776 standard
0.109147 standard
0.0892888 standard
0.00464793 standard
0.0144664 standard
0.614726 standard
1.00036 standard
0.673735 standard
0.0153005 standard
0.00664464 standard
0.100215 standard
0.204467 standard
0.108628 standard
0.186998 standard
0.212471 standard
0.0884977 standard
0.19864 standard
0.0718677 standard
0.329478 standard
0.345269 standard
0.343531 standard
0.329366 standard
0.00462454 standard
0.0803506 standard
0.0965967 standard
0.159874 standard
0.188394 standard
0.114183 standard
0.11579 standard
0.173028 standard
0.11788 standard
0.121551 standard
0.106235 standard
0.0875837 standard
0.00435913 standard
0.0152325 standard
0.607897 standard
1.00003 standard
0.632987 standard
0.0157801 standard
0.00705895 standard
0.0960966 standard
0.199078 standard
0.105902 standard
0.185372 standard
0.214636 standard
0.0890415 standard
0.196385 standard
0.0726557 standard
0.326125 standard
0.339806 standard
0.342021 standard
0.32597 standard
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