Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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External links:

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pKa (R. Williams)

1H NMR (Hans J. Reich)

Tyramine

Simulation outputs:

InChI=1S/C8H11NO/c9-6-5-7-1-3-8(10)4-2-7/h1-4,10H,5-6,9H2 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.00809
Temperature 298 K
pH 7.4
InChI InChI=1S/C8H11NO/c9-6-5-7-1-3-8(10)4-2-7/h1-4,10H,5-6,9H2
Note 1 Copied from spin matrix of bmse000243.
Note 2 Oscar Li

Sample description:

Compound Type Concentration
Tyramine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 0.1%
Show/Hide Spin System Matrix

Spin System Matrix

11 12 13 14 15 16 17 18
11 7.216 2.515 8.478 0 0 0 0 0
12 0 7.216 0 8.477 0 0 0 0
13 0 0 6.902 3.001 0 0 0 0
14 0 0 0 6.902 0 0 0 0
15 0 0 0 0 3.232 -12.421 8.269 8.632
16 0 0 0 0 0 3.232 6.225 5.966
17 0 0 0 0 0 0 2.926 -12.421
18 0 0 0 0 0 0 0 2.926

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.480054 standard
0.985877 standard
0.558272 standard
0.565364 standard
1.00007 standard
0.454836 standard
0.771984 standard
0.842174 standard
0.839868 standard
0.769849 standard
0.0644284 standard
0.157461 standard
0.521216 standard
0.633877 standard
0.68305 standard
0.773865 standard
0.600367 standard
0.152289 standard
0.0635212 standard
0.26702 standard
0.167207 standard
0.999453 standard
1.0 standard
0.167208 standard
0.267067 standard
0.111613 standard
0.168234 standard
0.180878 standard
0.538055 standard
0.685267 standard
0.211504 standard
0.720336 standard
0.617131 standard
0.17991 standard
0.170395 standard
0.10921 standard
0.419863 standard
0.999598 standard
1.0 standard
0.420062 standard
0.156573 standard
0.196155 standard
0.272745 standard
0.611648 standard
0.63628 standard
0.674876 standard
0.64537 standard
0.265561 standard
0.194988 standard
0.151947 standard
0.524377 standard
1.0 standard
0.999516 standard
0.524358 standard
0.177694 standard
0.211536 standard
0.635914 standard
0.621067 standard
0.665684 standard
0.665443 standard
0.20897 standard
0.171602 standard
0.564487 standard
0.999879 standard
1.00001 standard
0.563896 standard
0.198092 standard
0.226991 standard
0.659735 standard
0.615431 standard
0.661224 standard
0.687862 standard
0.222609 standard
0.19002 standard
0.597803 standard
0.999906 standard
1.00002 standard
0.597704 standard
0.380146 standard
0.928508 standard
0.638405 standard
0.0143181 standard
0.676669 standard
0.934775 standard
0.349279 standard
0.774147 standard
1.0 standard
0.998589 standard
0.773848 standard
0.445701 standard
0.997338 standard
0.619809 standard
0.0117431 standard
0.639295 standard
1.00001 standard
0.414993 standard
0.789079 standard
0.936943 standard
0.938115 standard
0.791347 standard
0.458599 standard
0.97972 standard
0.584156 standard
0.0104502 standard
0.595911 standard
1.00023 standard
0.432598 standard
0.773391 standard
0.878714 standard
0.878747 standard
0.773858 standard
0.470694 standard
0.984523 standard
0.568909 standard
0.00996925 standard
0.579532 standard
1.00017 standard
0.446435 standard
0.775489 standard
0.856308 standard
0.85633 standard
0.773197 standard
0.480128 standard
0.98604 standard
0.558375 standard
0.565141 standard
1.00007 standard
0.454894 standard
0.768737 standard
0.842311 standard
0.840024 standard
0.769978 standard
0.490772 standard
0.987399 standard
0.554279 standard
0.560166 standard
1.00044 standard
0.465434 standard
0.775779 standard
0.835463 standard
0.835888 standard
0.775415 standard
0.487294 standard
0.978278 standard
0.54971 standard
0.551274 standard
1.00079 standard
0.46687 standard
0.766601 standard
0.823706 standard
0.82797 standard
0.772261 standard
0.487946 standard
0.986892 standard
0.550815 standard
0.549488 standard
1.00061 standard
0.47294 standard
0.770407 standard
0.825297 standard
0.822588 standard
0.773199 standard
0.492793 standard
0.986027 standard
0.545474 standard
0.544971 standard
1.00024 standard
0.470107 standard
0.773657 standard
0.822791 standard
0.815101 standard
0.773378 standard
0.493945 standard
0.983322 standard
0.543366 standard
0.542485 standard
1.00157 standard
0.477493 standard
0.775869 standard
0.811326 standard
0.819748 standard
0.772992 standard
0.497441 standard
0.976752 standard
0.536969 standard
0.0093368 standard
0.537376 standard
1.00077 standard
0.479879 standard
0.784659 standard
0.798496 standard
0.801633 standard
0.787773 standard
0.503789 standard
0.989583 standard
0.532988 standard
0.00951501 standard
0.53291 standard
1.00098 standard
0.47954 standard
0.790633 standard
0.803245 standard
0.800883 standard
0.78827 standard
0.503547 standard
0.992157 standard
0.538739 standard
0.0093988 standard
0.533551 standard
1.00152 standard
0.49027 standard
0.794653 standard
0.805149 standard
0.807562 standard
0.794623 standard
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