Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Putrescine (1,4 diaminobutane)

Simulation outputs:

InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2 Parameter Value
Field strength 600.13(MHz)
RMSD of the fit 0.00871
Temperature 298 K
pH 7.4
InChI InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2
Note 1 RMSD low, but not perfect
Note 2 Oscar Li

Sample description:

Compound Type Concentration
Putrescine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

7 8 9 10 11 12 13 14
7 1.761 -26.25 6.715 6.715 5.281 6.629 0 0
8 0 1.761 6.715 6.715 11.369 5.484 0 0
9 0 0 1.761 -26.25 0 0 4.802 6.871
10 0 0 0 1.761 0 0 8.524 5.476
11 0 0 0 0 3.043 -13.611 0 0
12 0 0 0 0 0 3.041 0 0
13 0 0 0 0 0 0 3.048 -12.431
14 0 0 0 0 0 0 0 3.039

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
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Hover over the x/y-axis hold down left-button to move around the spectra.
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PPM Amplitude Peak Type
0.441097 standard
0.563758 standard
1.0 standard
0.428098 standard
0.913101 standard
0.424782 standard
0.320227 standard
0.899123 standard
0.512268 standard
0.535864 standard
1.0 standard
0.36296 standard
0.96283 standard
0.575949 standard
0.494558 standard
0.493419 standard
1.0 standard
0.370089 standard
0.378905 standard
0.972966 standard
0.566556 standard
0.474401 standard
0.472868 standard
1.0 standard
0.384866 standard
0.38487 standard
0.974262 standard
0.563558 standard
0.466869 standard
0.466009 standard
1.0 standard
0.389926 standard
0.389208 standard
0.975572 standard
0.560961 standard
0.461248 standard
0.460093 standard
1.00001 standard
0.394551 standard
0.419345 standard
0.551926 standard
0.987186 standard
0.435416 standard
0.429018 standard
1.00001 standard
0.424659 standard
0.433546 standard
0.560708 standard
1.00007 standard
0.431495 standard
0.419416 standard
0.996702 standard
0.437665 standard
0.436995 standard
0.561599 standard
1.00003 standard
0.427763 standard
0.410976 standard
0.972839 standard
0.436606 standard
0.439323 standard
0.563666 standard
1.00007 standard
0.428934 standard
0.409086 standard
0.942943 standard
0.42936 standard
0.441108 standard
0.563827 standard
1.0 standard
0.427798 standard
0.913025 standard
0.4245 standard
0.443169 standard
0.563137 standard
1.00003 standard
0.427375 standard
0.888258 standard
0.42087 standard
0.443381 standard
0.565183 standard
1.00003 standard
0.423855 standard
0.879221 standard
0.420333 standard
0.443245 standard
1.0001 standard
0.424161 standard
0.871441 standard
0.420113 standard
0.44589 standard
1.0001 standard
0.426191 standard
0.347941 standard
0.863164 standard
0.422936 standard
0.446524 standard
0.565511 standard
1.00004 standard
0.426131 standard
0.347848 standard
0.856007 standard
0.628259 standard
0.425522 standard
0.445494 standard
1.00013 standard
0.423374 standard
0.350282 standard
0.854155 standard
0.613735 standard
0.426411 standard
0.449146 standard
1.00038 standard
0.422034 standard
0.344928 standard
0.842928 standard
0.585403 standard
0.426878 standard
0.0598381 standard
0.450508 standard
1.00024 standard
0.42263 standard
0.351375 standard
0.825822 standard
0.528283 standard
0.064876 standard
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