Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

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Download entry NMR-STAR

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External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

3-Carboxypropyl-trimethyl-ammonium

Simulation outputs:

InChI=1S/C7H15NO2/c1-8(2,3)6-4-5-7(9)10/h4-6H2,1-3H3/p+1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01530
Temperature 298 K
pH 7.4
InChI InChI=1S/C7H15NO2/c1-8(2,3)6-4-5-7(9)10/h4-6H2,1-3H3/p+1
pKa 4.46StrongestAcidic([3H]-gamma-Butyrobetaine@DrugBankDBMET00521)
Note 1 22,23?24,25

Sample description:

Compound Type Concentration
3-carboxypropyl-trimethyl-ammonium Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 0.1%
Show/Hide Spin System Matrix

Spin System Matrix

11 12 13 14 15 16 17 18 19 24 25 20 21 22 23
11 3.126 -12.5 -12.5 0 0 0 0 0 0 0 0 0 0 0 0
12 0 3.126 -12.5 0 0 0 0 0 0 0 0 0 0 0 0
13 0 0 3.126 0 0 0 0 0 0 0 0 0 0 0 0
14 0 0 0 3.126 -12.5 -12.5 0 0 0 0 0 0 0 0 0
15 0 0 0 0 3.126 -12.5 0 0 0 0 0 0 0 0 0
16 0 0 0 0 0 3.126 0 0 0 0 0 0 0 0 0
17 0 0 0 0 0 0 3.126 -12.5 -12.5 0 0 0 0 0 0
18 0 0 0 0 0 0 0 3.126 -12.5 0 0 0 0 0 0
19 0 0 0 0 0 0 0 0 3.126 0 0 0 0 0 0
24 0 0 0 0 0 0 0 0 0 3.31 -12.4 6.364 11.613 0 0
25 0 0 0 0 0 0 0 0 0 0 3.31 13.882 3.005 0 0
20 0 0 0 0 0 0 0 0 0 0 0 2.019 -12.4 7.959 6.25
21 0 0 0 0 0 0 0 0 0 0 0 0 2.019 6.623 7.35
22 0 0 0 0 0 0 0 0 0 0 0 0 0 2.259 -12.4
23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.259

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.000340042 standard
0.000665225 standard
0.0124617 standard
0.0125581 standard
0.0126814 standard
0.0315568 standard
0.0288727 standard
0.0148853 standard
0.0240131 standard
0.0208484 standard
0.0328911 standard
0.029808 standard
0.0221146 standard
0.0241229 standard
0.0345896 standard
0.0150033 standard
0.022452 standard
0.000723 standard
0.000425042 standard
0.000451125 standard
0.081678 standard
0.132002 standard
0.0625515 standard
1.00038 standard
0.000995125 standard
0.0796632 standard
0.0333947 standard
0.0495817 standard
0.034314 standard
0.0781635 standard
0.000927042 standard
0.00313013 standard
0.00507813 standard
0.00630013 standard
0.00580513 standard
0.0127771 standard
0.0126412 standard
0.00871012 standard
0.0340373 standard
0.0203281 standard
0.0176891 standard
0.0203641 standard
0.0283661 standard
0.0589453 standard
0.0838371 standard
0.168598 standard
0.0229401 standard
0.0203891 standard
0.00874912 standard
0.00732612 standard
0.00394913 standard
0.00379913 standard
0.00422613 standard
0.00902513 standard
1.0 standard
0.061012 standard
0.0387901 standard
0.0203741 standard
0.0346772 standard
0.0178401 standard
0.00281313 standard
0.00435512 standard
0.00592812 standard
0.0103801 standard
0.00865113 standard
0.0159751 standard
0.0144821 standard
0.0119161 standard
0.037652 standard
0.0198081 standard
0.0224451 standard
0.024772 standard
0.0510352 standard
0.099475 standard
0.0926824 standard
0.075934 standard
0.0126912 standard
0.020528 standard
0.0101591 standard
0.0102251 standard
0.00839013 standard
1.0 standard
0.040452 standard
0.0376481 standard
0.048126 standard
0.0294041 standard
0.04349 standard
0.00529713 standard
0.006595 standard
0.012954 standard
0.0191024 standard
0.0148753 standard
0.013446 standard
0.0340161 standard
0.0230173 standard
0.023034 standard
0.0266983 standard
0.0402586 standard
0.041568 standard
0.0896416 standard
0.0375071 standard
0.0747834 standard
0.0249527 standard
0.0134771 standard
1.00001 standard
0.0694081 standard
0.0315873 standard
0.028218 standard
0.0300404 standard
0.047121 standard
0.032384 standard
0.0203231 standard
0.050973 standard
0.00566304 standard
0.00684338 standard
0.01359 standard
0.0205391 standard
0.0147664 standard
0.015358 standard
0.0341794 standard
0.0253553 standard
0.0211774 standard
0.0203102 standard
0.0271813 standard
0.0378279 standard
0.0340711 standard
0.034948 standard
0.035064 standard
0.0813655 standard
0.0456233 standard
0.0687145 standard
0.025546 standard
0.015515 standard
1.00001 standard
0.066411 standard
0.036295 standard
0.028705 standard
0.026836 standard
0.027696 standard
0.0501222 standard
0.0288881 standard
0.0202782 standard
0.0541787 standard
0.005993 standard
0.0070725 standard
0.0137956 standard
0.0223412 standard
0.015183 standard
0.0144004 standard
0.024748 standard
0.0336099 standard
0.0272406 standard
0.0212481 standard
0.0263224 standard
0.0226901 standard
0.0350983 standard
0.027398 standard
0.0298306 standard
0.0303641 standard
0.068934 standard
0.0715303 standard
0.0105021 standard
0.0263805 standard
0.017467 standard
1.00002 standard
0.0663084 standard
0.0245551 standard
0.0257751 standard
0.027785 standard
0.027401 standard
0.0524012 standard
0.0260324 standard
0.057133 standard
0.00182613 standard
0.000316125 standard
0.000553125 standard
0.00843567 standard
0.00902501 standard
0.0114291 standard
0.0280901 standard
0.0132153 standard
0.021997 standard
0.022 standard
0.0383344 standard
0.0281065 standard
0.025373 standard
0.018415 standard
0.0305952 standard
0.0283751 standard
0.0189928 standard
0.018139 standard
0.020854 standard
0.0211675 standard
0.000860125 standard
0.000900125 standard
0.001283 standard
0.0741782 standard
0.106027 standard
0.0376998 standard
0.034686 standard
1.00006 standard
0.0807303 standard
0.0296892 standard
0.0511691 standard
0.0296815 standard
0.071095 standard
0.000752125 standard
0.000878125 standard
0.000324125 standard
0.000592125 standard
0.0100792 standard
0.0104933 standard
0.0121129 standard
0.0291521 standard
0.0138712 standard
0.0220789 standard
0.0209741 standard
0.0352254 standard
0.02558 standard
0.0289561 standard
0.0208552 standard
0.023523 standard
0.033418 standard
0.0161979 standard
0.0225016 standard
0.000685 standard
0.000518125 standard
0.000584 standard
0.0767907 standard
0.120808 standard
0.0476131 standard
1.00014 standard
0.00155312 standard
0.0809645 standard
0.0318001 standard
0.0500286 standard
0.0321536 standard
0.0750126 standard
0.000882125 standard
0.00033525 standard
0.00064325 standard
0.0112544 standard
0.0115227 standard
0.012429 standard
0.031039 standard
0.0278391 standard
0.0145307 standard
0.0232537 standard
0.0209851 standard
0.0333588 standard
0.0298131 standard
0.022723 standard
0.0234742 standard
0.0342005 standard
0.0154278 standard
0.0228105 standard
0.000686 standard
0.000443375 standard
0.000489042 standard
0.0802033 standard
0.128362 standard
0.056519 standard
1.00025 standard
0.00109525 standard
0.0796872 standard
0.0327398 standard
0.0497942 standard
0.033361 standard
0.0775652 standard
0.0009 standard
0.000340042 standard
0.0006645 standard
0.0124597 standard
0.0125561 standard
0.0126793 standard
0.0315519 standard
0.028867 standard
0.0148824 standard
0.0240081 standard
0.0208424 standard
0.0328851 standard
0.029802 standard
0.0221086 standard
0.0241168 standard
0.0345844 standard
0.0150003 standard
0.0224498 standard
0.000723 standard
0.000425042 standard
0.000451125 standard
0.08167 standard
0.131994 standard
0.0625485 standard
1.00038 standard
0.00099525 standard
0.0796602 standard
0.033637 standard
0.0495769 standard
0.0341504 standard
0.0782876 standard
0.000920042 standard
0.000349042 standard
0.000321125 standard
0.00068 standard
0.0131906 standard
0.0132953 standard
0.0127761 standard
0.0314714 standard
0.029083 standard
0.0152616 standard
0.0246451 standard
0.021001 standard
0.0322094 standard
0.0295984 standard
0.0301676 standard
0.0220062 standard
0.0246413 standard
0.0192451 standard
0.0343956 standard
0.0147591 standard
0.0221283 standard
0.000727 standard
0.000392042 standard
0.000429083 standard
0.0817151 standard
0.133491 standard
0.0657354 standard
1.00054 standard
0.000974225 standard
0.0792073 standard
0.0339699 standard
0.0493413 standard
0.0488434 standard
0.034379 standard
0.0785982 standard
0.000933333 standard
0.000352025 standard
0.00032425 standard
0.000686681 standard
0.0140917 standard
0.0129562 standard
0.0308794 standard
0.0289902 standard
0.0154682 standard
0.0247445 standard
0.0208817 standard
0.0316737 standard
0.030231 standard
0.0304216 standard
0.0218887 standard
0.025232 standard
0.0189811 standard
0.0348185 standard
0.0145071 standard
0.0218662 standard
0.000734125 standard
0.000383225 standard
0.000418083 standard
0.0818251 standard
0.13466 standard
0.067486 standard
1.00073 standard
0.000969062 standard
0.0792377 standard
0.034297 standard
0.0495377 standard
0.0350758 standard
0.0786853 standard
0.000951 standard
0.000354018 standard
0.000325375 standard
0.000704375 standard
0.0143906 standard
0.0130255 standard
0.0318714 standard
0.029058 standard
0.0152028 standard
0.0253457 standard
0.020896 standard
0.0315804 standard
0.0300401 standard
0.030537 standard
0.0217043 standard
0.0250337 standard
0.0190704 standard
0.0336439 standard
0.0145751 standard
0.0217502 standard
0.000739284 standard
0.0003785 standard
0.000414063 standard
0.0829141 standard
0.135719 standard
0.0697128 standard
1.00083 standard
0.000966011 standard
0.07914 standard
0.0344732 standard
0.0490869 standard
0.0491769 standard
0.0342866 standard
0.0791162 standard
0.000950557 standard
0.000354083 standard
0.0003265 standard
0.000695167 standard
0.0147936 standard
0.012994 standard
0.0316091 standard
0.029533 standard
0.015397 standard
0.0255218 standard
0.0209667 standard
0.0318163 standard
0.0304548 standard
0.0306635 standard
0.0218112 standard
0.0253186 standard
0.0185046 standard
0.0332479 standard
0.014523 standard
0.0216492 standard
0.000733284 standard
0.00037875 standard
0.000411062 standard
0.0825591 standard
0.136226 standard
0.0711593 standard
1.00095 standard
0.000973571 standard
0.0791094 standard
0.0343686 standard
0.0498291 standard
0.0347236 standard
0.0791899 standard
0.000957471 standard
0.00036905 standard
0.000326625 standard
0.00070536 standard
0.0150059 standard
0.0129625 standard
0.0311221 standard
0.0294129 standard
0.0157729 standard
0.025429 standard
0.0209511 standard
0.031651 standard
0.0307742 standard
0.0306651 standard
0.0217074 standard
0.0256011 standard
0.0183091 standard
0.0339603 standard
0.0145815 standard
0.0213675 standard
0.000738675 standard
0.00037175 standard
0.000407102 standard
0.0807366 standard
0.136111 standard
0.0711574 standard
1.00118 standard
0.0009645 standard
0.0790337 standard
0.0346095 standard
0.0493398 standard
0.0483752 standard
0.0347122 standard
0.0790313 standard
0.00096725 standard
0.000352102 standard
0.000327625 standard
0.000705533 standard
0.0156473 standard
0.0133906 standard
0.0310517 standard
0.0300783 standard
0.0156572 standard
0.0256275 standard
0.0211819 standard
0.0312228 standard
0.030499 standard
0.0312558 standard
0.0213353 standard
0.0254478 standard
0.0183153 standard
0.033534 standard
0.014296 standard
0.0212817 standard
0.00073589 standard
0.00037075 standard
0.000401036 standard
0.0803994 standard
0.13546 standard
0.0734495 standard
1.00132 standard
0.000982273 standard
0.0791481 standard
0.0344622 standard
0.0481469 standard
0.0472342 standard
0.0349303 standard
0.078994 standard
0.000974397 standard
0.000365087 standard
0.000330446 standard
0.000706482 standard
0.0154198 standard
0.0134542 standard
0.0303162 standard
0.0293696 standard
0.015861 standard
0.0256411 standard
0.0213112 standard
0.0314923 standard
0.0304562 standard
0.0306228 standard
0.0214643 standard
0.0253407 standard
0.017964 standard
0.0336818 standard
0.01416 standard
0.0212088 standard
0.00073089 standard
0.000368563 standard
0.000408036 standard
0.0816304 standard
0.136821 standard
0.0736536 standard
1.00146 standard
0.000971397 standard
0.0793364 standard
0.0344984 standard
0.0505749 standard
0.0353169 standard
0.0795652 standard
0.000966521 standard
0.000382066 standard
0.000331562 standard
0.000716671 standard
0.0159938 standard
0.0134883 standard
0.0315367 standard
0.0159865 standard
0.0257542 standard
0.0210924 standard
0.0308826 standard
0.0307255 standard
0.0310324 standard
0.0273149 standard
0.0212085 standard
0.0257956 standard
0.0177415 standard
0.0338833 standard
0.014123 standard
0.0205903 standard
0.000723112 standard
0.000367681 standard
0.000403066 standard
0.0826632 standard
0.136665 standard
0.0751815 standard
1.00174 standard
0.00102113 standard
0.0795982 standard
0.0346564 standard
0.0494544 standard
0.0484348 standard
0.0342144 standard
0.0795921 standard
0.000964375 standard
0.000373054 standard
0.000347667 standard
0.000719463 standard
0.0165126 standard
0.0138351 standard
0.0312458 standard
0.0287806 standard
0.0163123 standard
0.0259852 standard
0.0214509 standard
0.0303066 standard
0.0308515 standard
0.0309758 standard
0.0213247 standard
0.0261571 standard
0.0172586 standard
0.0330282 standard
0.013833 standard
0.0208725 standard
0.00073325 standard
0.000362667 standard
0.000385049 standard
0.0814896 standard
0.138428 standard
0.0764073 standard
1.00234 standard
0.00100984 standard
0.079106 standard
0.0355098 standard
0.0480065 standard
0.0481858 standard
0.0346435 standard
0.0788209 standard
0.000966463 standard
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