Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

5-Methyluridine

Simulation outputs:

InChI=1S/C10H14N2O6/c1-4-2-12(10(17)11-8(4)16)9-7(15)6(14)5(3-13)18-9/h2,5-7,9,13-15H,3H2,1H3,(H,11,16,17)/t5-,6-,7-,9-/m1/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01253
Temperature 298 K
pH 7.4
InChI InChI=1S/C10H14N2O6/c1-4-2-12(10(17)11-8(4)16)9-7(15)6(14)5(3-13)18-9/h2,5-7,9,13-15H,3H2,1H3,(H,11,16,17)/t5-,6-,7-,9-/m1/s1
Note 1 26?27

Sample description:

Compound Type Concentration
5-methyluridine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

19 20 21 22 28 27 26 25 23 24
19 1.883 -14.9 -14.9 0 0 0 0 0 0 0
20 0 1.883 -14.9 0 0 0 0 0 0 0
21 0 0 1.883 0 0 0 0 0 0 0
22 0 0 0 7.696 0 0 0 0 0 0
28 0 0 0 0 5.908 4.946 0 0 0 0
27 0 0 0 0 0 4.334 5.269 0 0 0
26 0 0 0 0 0 0 4.237 5.523 0 0
25 0 0 0 0 0 0 0 4.109 4.195 2.987
23 0 0 0 0 0 0 0 0 3.813 -12.807
24 0 0 0 0 0 0 0 0 0 3.909

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
1.0 standard
0.0857189 standard
0.0905761 standard
0.14382 standard
0.151687 standard
0.147528 standard
0.155951 standard
0.0883912 standard
0.0924211 standard
0.0626491 standard
0.0794318 standard
0.0892879 standard
0.0961731 standard
0.0842871 standard
0.0977586 standard
0.090753 standard
0.0663621 standard
0.116369 standard
0.224226 standard
0.12148 standard
0.131373 standard
0.21883 standard
0.106967 standard
0.231946 standard
0.232209 standard
0.45457 standard
1.0 standard
0.00567313 standard
0.00686813 standard
0.00872112 standard
0.464738 standard
0.105539 standard
0.094477 standard
0.149384 standard
0.13913 standard
0.176513 standard
0.436129 standard
0.196431 standard
0.0287731 standard
0.168402 standard
0.120875 standard
0.141063 standard
0.456319 standard
1.0 standard
0.00955912 standard
0.013128 standard
0.173009 standard
0.424976 standard
0.0363211 standard
0.0558982 standard
0.12322 standard
0.175914 standard
0.275092 standard
0.184306 standard
0.170778 standard
0.141263 standard
0.163331 standard
0.045825 standard
0.0190531 standard
0.183599 standard
0.166151 standard
0.0167421 standard
0.456426 standard
1.0 standard
0.015443 standard
0.019823 standard
0.18385 standard
0.35431 standard
0.283456 standard
0.0173961 standard
0.065824 standard
0.108996 standard
0.12064 standard
0.151143 standard
0.23359 standard
0.211502 standard
0.168896 standard
0.058398 standard
0.011563 standard
0.199998 standard
0.187932 standard
0.0107481 standard
0.457176 standard
1.0 standard
0.019199 standard
0.0235954 standard
0.184542 standard
0.389926 standard
0.264974 standard
0.0129822 standard
0.024802 standard
0.0742676 standard
0.108982 standard
0.119819 standard
0.144508 standard
0.22401 standard
0.24022 standard
0.177277 standard
0.0643983 standard
0.00884512 standard
0.209113 standard
0.198143 standard
0.008423 standard
0.457266 standard
1.0 standard
0.022597 standard
0.0273941 standard
0.183989 standard
0.42636 standard
0.252938 standard
0.0261794 standard
0.0364154 standard
0.0599967 standard
0.109147 standard
0.117989 standard
0.0795744 standard
0.122711 standard
0.219511 standard
0.23431 standard
0.184245 standard
0.0695984 standard
0.00676913 standard
0.217313 standard
0.206742 standard
0.00645513 standard
0.457444 standard
1.0 standard
0.051065 standard
0.0567687 standard
0.170592 standard
0.198957 standard
0.178364 standard
0.201094 standard
0.0527009 standard
0.0586514 standard
0.061049 standard
0.072123 standard
0.0831303 standard
0.103537 standard
0.0760697 standard
0.105827 standard
0.10084 standard
0.0701692 standard
0.115728 standard
0.221807 standard
0.128953 standard
0.150689 standard
0.211728 standard
0.0909266 standard
0.231845 standard
0.23212 standard
0.456593 standard
1.0 standard
0.0681386 standard
0.0738939 standard
0.157709 standard
0.173722 standard
0.162437 standard
0.177604 standard
0.0702439 standard
0.0754658 standard
0.0618093 standard
0.0759906 standard
0.0861133 standard
0.0993813 standard
0.0808229 standard
0.101418 standard
0.0952563 standard
0.0680041 standard
0.115743 standard
0.223794 standard
0.124521 standard
0.140594 standard
0.216487 standard
0.0997359 standard
0.232389 standard
0.232273 standard
0.455411 standard
1.0 standard
0.0787607 standard
0.0840739 standard
0.149295 standard
0.160179 standard
0.153425 standard
0.164329 standard
0.081213 standard
0.0857898 standard
0.0623162 standard
0.078491 standard
0.0879525 standard
0.0970984 standard
0.0833368 standard
0.0991617 standard
0.0921851 standard
0.0670564 standard
0.115975 standard
0.22393 standard
0.122669 standard
0.134957 standard
0.217036 standard
0.104257 standard
0.23221 standard
0.232171 standard
0.454823 standard
1.0 standard
0.0857259 standard
0.0905821 standard
0.14381 standard
0.151673 standard
0.147515 standard
0.155935 standard
0.0883962 standard
0.0924261 standard
0.062646 standard
0.0794183 standard
0.089272 standard
0.0961563 standard
0.0842743 standard
0.0977486 standard
0.0907577 standard
0.066388 standard
0.116366 standard
0.22422 standard
0.121475 standard
0.131558 standard
0.218845 standard
0.10697 standard
0.231943 standard
0.232206 standard
0.45457 standard
1.0 standard
0.090608 standard
0.0950253 standard
0.139951 standard
0.14625 standard
0.143231 standard
0.149876 standard
0.093178 standard
0.0968632 standard
0.0629286 standard
0.0803243 standard
0.0896248 standard
0.0948311 standard
0.0855494 standard
0.0966385 standard
0.0891294 standard
0.0660164 standard
0.116546 standard
0.223941 standard
0.120843 standard
0.129342 standard
0.219976 standard
0.108752 standard
0.232184 standard
0.231806 standard
0.454429 standard
1.0 standard
0.0950706 standard
0.0963683 standard
0.137017 standard
0.142149 standard
0.14036 standard
0.146076 standard
0.0980871 standard
0.100231 standard
0.0629586 standard
0.0793818 standard
0.0890908 standard
0.0940499 standard
0.0859047 standard
0.0967348 standard
0.0895382 standard
0.0668736 standard
0.116698 standard
0.22498 standard
0.120405 standard
0.127798 standard
0.221002 standard
0.110207 standard
0.23147 standard
0.231987 standard
0.454251 standard
1.0 standard
0.0972969 standard
0.0978095 standard
0.135687 standard
0.137989 standard
0.141573 standard
0.14454 standard
0.100461 standard
0.100761 standard
0.0617618 standard
0.081205 standard
0.0905496 standard
0.0923077 standard
0.0879561 standard
0.096808 standard
0.0891484 standard
0.0678136 standard
0.116748 standard
0.225116 standard
0.120156 standard
0.12676 standard
0.221952 standard
0.110656 standard
0.231934 standard
0.231934 standard
0.45394 standard
1.0 standard
0.0985199 standard
0.0987748 standard
0.136952 standard
0.136612 standard
0.139832 standard
0.141874 standard
0.101493 standard
0.100848 standard
0.0611154 standard
0.0808284 standard
0.0919206 standard
0.0932072 standard
0.08807 standard
0.0964651 standard
0.0887849 standard
0.0674398 standard
0.116886 standard
0.22499 standard
0.119947 standard
0.12614 standard
0.220865 standard
0.11123 standard
0.231894 standard
0.231894 standard
0.453899 standard
1.0 standard
0.100592 standard
0.101147 standard
0.135171 standard
0.134795 standard
0.137863 standard
0.138346 standard
0.103892 standard
0.103299 standard
0.0615103 standard
0.0803285 standard
0.089594 standard
0.0921173 standard
0.0890021 standard
0.0961717 standard
0.0879583 standard
0.0671859 standard
0.117022 standard
0.223716 standard
0.119836 standard
0.125259 standard
0.221118 standard
0.11205 standard
0.231907 standard
0.231907 standard
0.454223 standard
1.0 standard
0.101526 standard
0.102085 standard
0.134221 standard
0.13383 standard
0.137054 standard
0.137527 standard
0.104533 standard
0.103952 standard
0.0617649 standard
0.0811739 standard
0.0903143 standard
0.0915175 standard
0.0884436 standard
0.09574 standard
0.0875352 standard
0.0672421 standard
0.117174 standard
0.22387 standard
0.119743 standard
0.125286 standard
0.223111 standard
0.112348 standard
0.232089 standard
0.232089 standard
0.454205 standard
1.0 standard
0.102282 standard
0.102856 standard
0.133405 standard
0.132992 standard
0.136428 standard
0.136888 standard
0.10547 standard
0.104909 standard
0.0617276 standard
0.0819429 standard
0.0900389 standard
0.0913941 standard
0.088431 standard
0.0953914 standard
0.0880583 standard
0.0669246 standard
0.117023 standard
0.226947 standard
0.119724 standard
0.125006 standard
0.222355 standard
0.11271 standard
0.231969 standard
0.231969 standard
0.454197 standard
1.0 standard
0.103511 standard
0.104106 standard
0.132073 standard
0.131636 standard
0.135165 standard
0.135605 standard
0.106968 standard
0.106437 standard
0.0620603 standard
0.0822339 standard
0.0911843 standard
0.0911288 standard
0.0884654 standard
0.0959072 standard
0.087758 standard
0.0667862 standard
0.117106 standard
0.226152 standard
0.119588 standard
0.124499 standard
0.220687 standard
0.113315 standard
0.23185 standard
0.23185 standard
0.454184 standard
1.0 standard
0.105614 standard
0.106231 standard
0.128878 standard
0.129411 standard
0.132891 standard
0.133311 standard
0.109046 standard
0.108547 standard
0.0623498 standard
0.0833214 standard
0.0906358 standard
0.0899335 standard
0.0898347 standard
0.0968574 standard
0.0886708 standard
0.0664163 standard
0.117297 standard
0.224285 standard
0.119254 standard
0.12368 standard
0.224691 standard
0.113985 standard
0.23207 standard
0.23207 standard
0.454167 standard
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