Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

3-Methyladipic-acid

Simulation outputs:

InChI=1S/C7H12O4/c1-5(4-7(10)11)2-3-6(8)9/h5H,2-4H2,1H3,(H,8,9)(H,10,11)/t5-/m1/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01422
Temperature 298 K
pH 7.4
InChI InChI=1S/C7H12O4/c1-5(4-7(10)11)2-3-6(8)9/h5H,2-4H2,1H3,(H,8,9)(H,10,11)/t5-/m1/s1
Note 1 lr H-C HSQC for connectivity

Sample description:

Compound Type Concentration
3-methyladipic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

12 13 14 21 15 16 17 18 19 20
12 0.894 -12.5 -12.5 6.626 0 0 0 0 0 0
13 0 0.894 -12.5 6.626 0 0 0 0 0 0
14 0 0 0.894 6.626 0 0 0 0 0 0
21 0 0 0 1.805 7.631 6.228 0 0 9.165 5.794
15 0 0 0 0 1.44 -13.374 10.295 5.67 0 0
16 0 0 0 0 0 1.559 6.185 10.077 0 0
17 0 0 0 0 0 0 2.171 -20.924 0 0
18 0 0 0 0 0 0 0 2.207 0 0
19 0 0 0 0 0 0 0 0 1.929 -13.517
20 0 0 0 0 0 0 0 0 0 2.235

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
1.00017 standard
1.00017 standard
0.0273097 standard
0.0455871 standard
0.0378652 standard
0.0670225 standard
0.0526202 standard
0.0794712 standard
0.071847 standard
0.0608439 standard
0.0766048 standard
0.046009 standard
0.0417188 standard
0.0750872 standard
0.0540244 standard
0.0791829 standard
0.0839511 standard
0.0603817 standard
0.0757501 standard
0.0371498 standard
0.054658 standard
0.0304832 standard
0.00571052 standard
0.0233104 standard
0.0125126 standard
0.0490648 standard
0.0363113 standard
0.0670461 standard
0.0662486 standard
0.0736134 standard
0.0403996 standard
0.054942 standard
0.0155222 standard
0.0258695 standard
0.00648694 standard
0.003825 standard
0.138738 standard
0.124314 standard
0.164492 standard
0.144347 standard
0.00136912 standard
0.0173515 standard
0.0227796 standard
0.0148088 standard
0.0217768 standard
0.122033 standard
0.239508 standard
0.150851 standard
0.147783 standard
0.228808 standard
0.134284 standard
0.182279 standard
0.167386 standard
0.0326067 standard
0.147687 standard
0.145479 standard
0.996434 standard
1.0 standard
0.0460401 standard
0.0925951 standard
0.0873001 standard
0.0975391 standard
0.175242 standard
0.167126 standard
0.192936 standard
0.285945 standard
0.184121 standard
0.513091 standard
0.320801 standard
0.139373 standard
0.0174661 standard
0.999471 standard
1.00001 standard
0.0124871 standard
0.0292051 standard
0.0788591 standard
0.0928882 standard
0.139189 standard
0.164152 standard
0.156955 standard
0.154666 standard
0.120244 standard
0.141498 standard
0.139126 standard
0.193463 standard
0.537512 standard
0.431705 standard
0.194103 standard
0.0259341 standard
0.00293713 standard
0.999872 standard
1.00002 standard
0.00696113 standard
0.0117221 standard
0.032309 standard
0.0599461 standard
0.089463 standard
0.128276 standard
0.152581 standard
0.121624 standard
0.113893 standard
0.09929 standard
0.140419 standard
0.14192 standard
0.190405 standard
0.194572 standard
0.397962 standard
0.462574 standard
0.234021 standard
0.0262961 standard
0.00285113 standard
0.999899 standard
1.0 standard
0.00618213 standard
0.00496813 standard
0.0134891 standard
0.0357912 standard
0.0335231 standard
0.097891 standard
0.120067 standard
0.133319 standard
0.128833 standard
0.099798 standard
0.10528 standard
0.100401 standard
0.0465521 standard
0.0526551 standard
0.0918341 standard
0.118168 standard
0.144839 standard
0.194583 standard
0.165128 standard
0.381164 standard
0.457846 standard
0.234815 standard
0.0540161 standard
0.0231111 standard
0.00297113 standard
0.999928 standard
1.0 standard
0.00301113 standard
0.00629113 standard
0.00605113 standard
0.0147791 standard
0.0385496 standard
0.034096 standard
0.103921 standard
0.0820062 standard
0.122647 standard
0.152014 standard
0.115908 standard
0.099294 standard
0.101221 standard
0.0835403 standard
0.049038 standard
0.0661855 standard
0.111894 standard
0.14807 standard
0.092963 standard
0.065278 standard
0.0648821 standard
0.190524 standard
0.154135 standard
0.37013 standard
0.448134 standard
0.348795 standard
0.22288 standard
0.0569522 standard
0.0204952 standard
0.00318113 standard
0.999992 standard
1.0 standard
0.00107113 standard
0.013942 standard
0.0357269 standard
0.0518251 standard
0.0447152 standard
0.0448195 standard
0.117977 standard
0.146472 standard
0.070916 standard
0.123143 standard
0.0881195 standard
0.0843864 standard
0.076731 standard
0.0256741 standard
0.0322806 standard
0.0232374 standard
0.0070555 standard
0.0215901 standard
0.0131605 standard
0.042441 standard
0.0582827 standard
0.0603252 standard
0.0560674 standard
0.072894 standard
0.0475432 standard
0.0696992 standard
0.129197 standard
0.076658 standard
0.180736 standard
0.147595 standard
0.00616913 standard
0.00753537 standard
0.0122583 standard
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0.00773208 standard
0.00254913 standard
1.00015 standard
1.00015 standard
0.0206566 standard
0.0452727 standard
0.0334782 standard
0.0564931 standard
0.0541742 standard
0.103011 standard
0.107509 standard
0.061348 standard
0.0541793 standard
0.0717635 standard
0.062402 standard
0.0836886 standard
0.081699 standard
0.047909 standard
0.0780311 standard
0.0315722 standard
0.0421779 standard
0.0265746 standard
0.00145913 standard
0.00585745 standard
0.0223086 standard
0.012535 standard
0.0459104 standard
0.0627905 standard
0.0632033 standard
0.0731341 standard
0.0417743 standard
0.0557671 standard
0.0204302 standard
0.0301182 standard
0.135767 standard
0.10477 standard
0.173583 standard
0.146211 standard
0.00167712 standard
0.0099986 standard
0.0156311 standard
0.0164911 standard
0.15586 standard
0.161838 standard
0.177621 standard
0.236962 standard
0.237752 standard
0.189964 standard
0.225411 standard
0.181998 standard
0.237365 standard
0.140013 standard
0.138859 standard
0.0111515 standard
1.00066 standard
1.00066 standard
0.025124 standard
0.046099 standard
0.0360122 standard
0.0617901 standard
0.0541936 standard
0.0899251 standard
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0.065307 standard
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0.0735481 standard
0.040645 standard
0.0551677 standard
0.0168452 standard
0.0262033 standard
0.00722344 standard
0.00493225 standard
0.138005 standard
0.118082 standard
0.168143 standard
0.145209 standard
0.00143913 standard
0.0136408 standard
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0.0112338 standard
0.0185631 standard
0.133469 standard
0.149668 standard
0.155178 standard
0.166939 standard
0.166627 standard
0.154064 standard
0.151355 standard
0.236909 standard
0.185047 standard
0.148692 standard
0.135877 standard
1.00021 standard
1.00021 standard
0.0273121 standard
0.0455851 standard
0.0378642 standard
0.0670157 standard
0.0526141 standard
0.0794591 standard
0.071842 standard
0.0606868 standard
0.0765201 standard
0.046006 standard
0.0417128 standard
0.0754161 standard
0.0540159 standard
0.0792189 standard
0.0839982 standard
0.0603837 standard
0.0757462 standard
0.0371499 standard
0.0546613 standard
0.0305064 standard
0.0057108 standard
0.0233142 standard
0.0125094 standard
0.0490626 standard
0.036305 standard
0.0670902 standard
0.0661821 standard
0.073451 standard
0.0405033 standard
0.0548873 standard
0.0155171 standard
0.0258406 standard
0.00648933 standard
0.00382225 standard
0.138542 standard
0.124374 standard
0.164493 standard
0.144353 standard
0.00136912 standard
0.0173575 standard
0.0227651 standard
0.014791 standard
0.0217798 standard
0.122023 standard
0.239488 standard
0.150831 standard
0.147842 standard
0.228953 standard
0.133943 standard
0.1821 standard
0.167376 standard
0.0325996 standard
0.147692 standard
0.145543 standard
1.00076 standard
1.00076 standard
0.0288382 standard
0.0426059 standard
0.0449892 standard
0.0389851 standard
0.0706041 standard
0.0520736 standard
0.0514577 standard
0.0723184 standard
0.0734742 standard
0.0574186 standard
0.0684795 standard
0.0445414 standard
0.0413305 standard
0.078413 standard
0.0528947 standard
0.0776191 standard
0.085508 standard
0.0650428 standard
0.0745183 standard
0.0388167 standard
0.058152 standard
0.0315267 standard
0.00574443 standard
0.0237095 standard
0.012709 standard
0.0500439 standard
0.036455 standard
0.0684003 standard
0.0669262 standard
0.0676666 standard
0.0740046 standard
0.0401696 standard
0.0548965 standard
0.0146682 standard
0.025684 standard
0.00626047 standard
0.00338205 standard
0.139071 standard
0.12862 standard
0.161777 standard
0.143759 standard
0.001344 standard
0.0206235 standard
0.0259873 standard
0.0181911 standard
0.0248125 standard
0.114509 standard
0.130475 standard
0.225831 standard
0.20488 standard
0.126907 standard
0.11218 standard
0.175752 standard
0.179078 standard
0.0458854 standard
0.148418 standard
0.140037 standard
1.00076 standard
1.00076 standard
0.0301723 standard
0.0419806 standard
0.0449421 standard
0.040324 standard
0.073028 standard
0.0515449 standard
0.0520912 standard
0.0654557 standard
0.068361 standard
0.0756061 standard
0.0550558 standard
0.0630944 standard
0.0614014 standard
0.0430047 standard
0.0409986 standard
0.0797868 standard
0.05176 standard
0.0758863 standard
0.0867024 standard
0.0675874 standard
0.0726021 standard
0.0399386 standard
0.0607886 standard
0.0319318 standard
0.00576143 standard
0.023924 standard
0.0129332 standard
0.0506144 standard
0.037145 standard
0.0694395 standard
0.0670808 standard
0.0684082 standard
0.0732086 standard
0.0402083 standard
0.054397 standard
0.0143554 standard
0.0254552 standard
0.00613049 standard
0.0030982 standard
0.139108 standard
0.131283 standard
0.159316 standard
0.142929 standard
0.00133725 standard
0.0239305 standard
0.0286366 standard
0.0218043 standard
0.0279334 standard
0.109098 standard
0.113823 standard
0.133284 standard
0.129451 standard
0.132562 standard
0.13842 standard
0.110836 standard
0.106711 standard
0.0371324 standard
0.16479 standard
0.186026 standard
0.148189 standard
0.140624 standard
1.00225 standard
1.00225 standard
0.0307224 standard
0.0425778 standard
0.045389 standard
0.0404293 standard
0.0746221 standard
0.0514269 standard
0.0519993 standard
0.0645163 standard
0.0672941 standard
0.0767809 standard
0.0545361 standard
0.0613729 standard
0.0594007 standard
0.0422882 standard
0.0408994 standard
0.0793819 standard
0.0515518 standard
0.07484 standard
0.0868843 standard
0.0687786 standard
0.0721587 standard
0.0400495 standard
0.0621006 standard
0.0323529 standard
0.00579618 standard
0.0242029 standard
0.0130383 standard
0.0511928 standard
0.0377601 standard
0.0696063 standard
0.0678184 standard
0.0687131 standard
0.0737427 standard
0.0403245 standard
0.0549572 standard
0.0142109 standard
0.0256422 standard
0.00610317 standard
0.0030052 standard
0.139822 standard
0.13271 standard
0.158614 standard
0.14271 standard
0.00134012 standard
0.0253285 standard
0.0302475 standard
0.0237353 standard
0.0294395 standard
0.105574 standard
0.109697 standard
0.123011 standard
0.120632 standard
0.121007 standard
0.123544 standard
0.107547 standard
0.104593 standard
0.0346266 standard
0.176146 standard
0.167512 standard
0.0424992 standard
0.14544 standard
0.141688 standard
1.00075 standard
1.00075 standard
0.0313364 standard
0.0426616 standard
0.0456309 standard
0.0411264 standard
0.0763977 standard
0.0522179 standard
0.0529588 standard
0.0634168 standard
0.0659141 standard
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0.0734891 standard
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0.0325189 standard
0.00579363 standard
0.0239465 standard
0.0130643 standard
0.0507691 standard
0.0377183 standard
0.0693829 standard
0.068019 standard
0.0680207 standard
0.0738811 standard
0.0398885 standard
0.0547261 standard
0.0140954 standard
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0.0060666 standard
0.00291445 standard
0.139495 standard
0.133567 standard
0.157403 standard
0.142348 standard
0.00134 standard
0.0270513 standard
0.0318282 standard
0.0256787 standard
0.0310229 standard
0.102418 standard
0.106962 standard
0.115737 standard
0.12953 standard
0.130218 standard
0.116075 standard
0.104501 standard
0.10246 standard
0.0340452 standard
0.170117 standard
0.0627811 standard
0.163217 standard
0.0474105 standard
0.144304 standard
0.141759 standard
1.00015 standard
1.00015 standard
0.0318635 standard
0.0420141 standard
0.0450549 standard
0.0415749 standard
0.0763542 standard
0.0517623 standard
0.0534057 standard
0.0622099 standard
0.0637414 standard
0.0788098 standard
0.0529571 standard
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0.0811568 standard
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0.0642953 standard
0.032926 standard
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0.0367943 standard
0.0704699 standard
0.0668791 standard
0.0686367 standard
0.073105 standard
0.0400293 standard
0.0536832 standard
0.01404 standard
0.0251062 standard
0.00601178 standard
0.00276804 standard
0.139265 standard
0.134737 standard
0.155695 standard
0.141793 standard
0.00134625 standard
0.0296586 standard
0.0340801 standard
0.0287388 standard
0.0334679 standard
0.0991762 standard
0.102519 standard
0.109073 standard
0.136284 standard
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0.102293 standard
0.100864 standard
0.0353704 standard
0.0367046 standard
0.178405 standard
0.181396 standard
0.143607 standard
0.141424 standard
1.00035 standard
1.00035 standard
0.0321225 standard
0.0421439 standard
0.0449268 standard
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0.0771103 standard
0.0520337 standard
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0.00271817 standard
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0.00135604 standard
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0.0301669 standard
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0.100793 standard
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0.107954 standard
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0.100589 standard
0.0994384 standard
0.0361889 standard
0.0346775 standard
0.161564 standard
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0.143642 standard
0.141536 standard
1.00264 standard
1.00264 standard
0.0325135 standard
0.0427853 standard
0.0453503 standard
0.0422427 standard
0.0772426 standard
0.0518213 standard
0.0542378 standard
0.0620734 standard
0.0626666 standard
0.0794084 standard
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0.0562856 standard
0.0536863 standard
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0.050691 standard
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0.0656346 standard
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0.00603292 standard
0.00266567 standard
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0.001367 standard
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0.14192 standard
1.00261 standard
1.00261 standard
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0.079053 standard
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0.1432 standard
0.141409 standard
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