Guided Ideographic Spin System Model Optimization

Global links:

GISSMO Home

GISSMO Library

GISSMO Tutorial

GISSMO-GUI

Web Services:

Peak Search

Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

3-Methyl-2-oxopentanoic acid

Simulation outputs:

InChI=1S/C6H10O3/c1-3-4(2)5(7)6(8)9/h4H,3H2,1-2H3,(H,8,9)/t4-/m1/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.00772
Temperature 298 K
pH 7.4
InChI InChI=1S/C6H10O3/c1-3-4(2)5(7)6(8)9/h4H,3H2,1-2H3,(H,8,9)/t4-/m1/s1
Note 1 Can't think of other ways to lower the RMSD, but the peaks are all aligned. Later optimized coupling between 16 and 17, went well. Oscar Li

Sample description:

Compound Type Concentration
3-methyl-2-oxopentanoic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 14 15 16 17 18
10 0.882 -12.4 0 0 0 0 7.319 7.611 0
11 0 0.882 0 0 0 0 7.319 7.611 0
12 0 0 0.882 0 0 0 7.319 7.611 0
13 0 0 0 1.087 0 0 0 0 7.085
14 0 0 0 0 1.087 -12.4 0 0 7.085
15 0 0 0 0 0 1.087 0 0 7.085
16 0 0 0 0 0 0 1.689 -14.105 5.956
17 0 0 0 0 0 0 0 1.45 6.255
18 0 0 0 0 0 0 0 0 2.924

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.48941 standard
0.975838 standard
0.508799 standard
1.00025 standard
1.00009 standard
0.0214477 standard
0.0624945 standard
0.0992086 standard
0.137127 standard
0.112134 standard
0.0780132 standard
0.024757 standard
0.0255675 standard
0.0777317 standard
0.11173 standard
0.12494 standard
0.09555 standard
0.0628327 standard
0.0203351 standard
0.0237216 standard
0.0870825 standard
0.162398 standard
0.162926 standard
0.0865924 standard
0.0237117 standard
0.0648311 standard
0.141058 standard
0.125272 standard
0.442875 standard
1.0 standard
0.8905 standard
0.100222 standard
0.157862 standard
0.169877 standard
0.163549 standard
0.180091 standard
0.0843063 standard
0.116227 standard
0.0894381 standard
0.083658 standard
0.0517791 standard
0.0281923 standard
0.00911913 standard
0.00626912 standard
0.00478413 standard
0.0287351 standard
0.078603 standard
0.108649 standard
0.0849531 standard
0.0376521 standard
0.0104341 standard
0.218307 standard
0.697037 standard
0.998599 standard
1.0 standard
0.078816 standard
0.1987 standard
0.229 standard
0.137991 standard
0.181315 standard
0.100776 standard
0.08898 standard
0.0310401 standard
0.0458902 standard
0.0163991 standard
0.00632112 standard
0.030248 standard
0.0899784 standard
0.140324 standard
0.126583 standard
0.0591501 standard
0.0159411 standard
0.264942 standard
0.84704 standard
0.507705 standard
0.929375 standard
1.0 standard
0.0542279 standard
0.077274 standard
0.141849 standard
0.0825311 standard
0.155095 standard
0.151898 standard
0.07906 standard
0.110224 standard
0.149754 standard
0.133775 standard
0.103891 standard
0.0557146 standard
0.022764 standard
0.00820113 standard
0.0288241 standard
0.0897032 standard
0.149205 standard
0.139313 standard
0.0694644 standard
0.018335 standard
0.284589 standard
0.891351 standard
0.502175 standard
0.936015 standard
1.00001 standard
0.0412361 standard
0.049628 standard
0.0795087 standard
0.134796 standard
0.141459 standard
0.118409 standard
0.129572 standard
0.117482 standard
0.131237 standard
0.104041 standard
0.059701 standard
0.02575 standard
0.009087 standard
0.0280441 standard
0.0891109 standard
0.151842 standard
0.144682 standard
0.07276 standard
0.0190824 standard
0.30257 standard
0.919569 standard
0.500599 standard
0.942384 standard
1.00001 standard
0.0304441 standard
0.0477682 standard
0.0813073 standard
0.130268 standard
0.165325 standard
0.171837 standard
0.147245 standard
0.105924 standard
0.063231 standard
0.0284901 standard
0.009919 standard
0.0275242 standard
0.0884221 standard
0.153479 standard
0.148041 standard
0.0754272 standard
0.0195575 standard
0.412487 standard
0.977672 standard
0.516002 standard
0.990917 standard
1.00004 standard
0.0217235 standard
0.0516031 standard
0.0924989 standard
0.128719 standard
0.120339 standard
0.0784649 standard
0.0265687 standard
0.0340754 standard
0.0886292 standard
0.1185 standard
0.121216 standard
0.0815147 standard
0.0470364 standard
0.0151563 standard
0.0239731 standard
0.0856022 standard
0.159873 standard
0.160989 standard
0.0862763 standard
0.0234948 standard
0.455832 standard
0.977611 standard
0.517919 standard
0.998731 standard
1.00004 standard
0.0217303 standard
0.0574564 standard
0.0964726 standard
0.133615 standard
0.114536 standard
0.078815 standard
0.0248157 standard
0.0291086 standard
0.0835406 standard
0.114485 standard
0.123515 standard
0.0897253 standard
0.0559605 standard
0.0177552 standard
0.0237196 standard
0.0865562 standard
0.161743 standard
0.16231 standard
0.0868707 standard
0.0237226 standard
0.477302 standard
0.976122 standard
0.513461 standard
0.999866 standard
1.0 standard
0.0217296 standard
0.0610033 standard
0.0994137 standard
0.135958 standard
0.113115 standard
0.0782848 standard
0.0247711 standard
0.0267376 standard
0.0799359 standard
0.111852 standard
0.124389 standard
0.0933312 standard
0.0607133 standard
0.0194422 standard
0.0237161 standard
0.0869163 standard
0.162237 standard
0.162851 standard
0.0869254 standard
0.0237157 standard
0.489347 standard
0.975822 standard
0.508658 standard
0.999811 standard
1.00015 standard
0.0214436 standard
0.0623955 standard
0.0991841 standard
0.137254 standard
0.11209 standard
0.0775008 standard
0.024743 standard
0.0255505 standard
0.0777298 standard
0.112141 standard
0.125016 standard
0.0959052 standard
0.0628837 standard
0.0203322 standard
0.0237157 standard
0.0870173 standard
0.162344 standard
0.162833 standard
0.0862562 standard
0.0237037 standard
0.495796 standard
0.973584 standard
0.509231 standard
1.0003 standard
1.00022 standard
0.0210487 standard
0.063729 standard
0.0991824 standard
0.138293 standard
0.110949 standard
0.07755 standard
0.024651 standard
0.0250845 standard
0.0770176 standard
0.109961 standard
0.125052 standard
0.0978 standard
0.0644834 standard
0.0207541 standard
0.0237116 standard
0.0865455 standard
0.162787 standard
0.163088 standard
0.0874675 standard
0.0237267 standard
0.50154 standard
0.974263 standard
0.506695 standard
0.998624 standard
1.0 standard
0.0209357 standard
0.0651165 standard
0.100827 standard
0.138949 standard
0.109341 standard
0.0767359 standard
0.024649 standard
0.0247234 standard
0.076327 standard
0.108063 standard
0.124636 standard
0.0980426 standard
0.0658345 standard
0.0210293 standard
0.0236956 standard
0.0872217 standard
0.16199 standard
0.160717 standard
0.0860404 standard
0.0236766 standard
0.501027 standard
0.973461 standard
0.506164 standard
1.0 standard
0.998863 standard
0.0210778 standard
0.0652992 standard
0.101118 standard
0.138566 standard
0.110582 standard
0.0762488 standard
0.0245079 standard
0.0246145 standard
0.0758432 standard
0.109063 standard
0.126027 standard
0.0980574 standard
0.065831 standard
0.0211583 standard
0.0237037 standard
0.0871612 standard
0.163105 standard
0.163379 standard
0.0860994 standard
0.0236866 standard
0.501672 standard
0.969685 standard
0.504233 standard
1.0 standard
0.998566 standard
0.0211568 standard
0.0657174 standard
0.101068 standard
0.138974 standard
0.110085 standard
0.0758427 standard
0.0243899 standard
0.0244945 standard
0.0757146 standard
0.107383 standard
0.124034 standard
0.100294 standard
0.0663256 standard
0.0212502 standard
0.0236927 standard
0.0876493 standard
0.163059 standard
0.162099 standard
0.0872046 standard
0.0237169 standard
0.504582 standard
0.976193 standard
0.506092 standard
1.0 standard
0.998289 standard
0.0213518 standard
0.0666286 standard
0.102109 standard
0.13886 standard
0.109601 standard
0.0751354 standard
0.024201 standard
0.0243536 standard
0.0749589 standard
0.107389 standard
0.125373 standard
0.101588 standard
0.0670843 standard
0.0214694 standard
0.0236917 standard
0.0872095 standard
0.161995 standard
0.162761 standard
0.086495 standard
0.0236836 standard
0.504008 standard
0.972782 standard
0.50534 standard
1.0 standard
0.997662 standard
0.0214168 standard
0.067027 standard
0.103069 standard
0.139444 standard
0.108936 standard
0.0746608 standard
0.0240869 standard
0.0242575 standard
0.0751131 standard
0.10192 standard
0.105239 standard
0.124203 standard
0.101069 standard
0.0677962 standard
0.0215043 standard
0.0236957 standard
0.0865459 standard
0.162042 standard
0.162675 standard
0.0866897 standard
0.0236917 standard
0.504168 standard
0.97059 standard
0.505059 standard
1.0 standard
0.997666 standard
0.0214798 standard
0.0672344 standard
0.101974 standard
0.139163 standard
0.108955 standard
0.0743007 standard
0.024055 standard
0.0241945 standard
0.0749131 standard
0.106012 standard
0.126424 standard
0.100401 standard
0.0681641 standard
0.0216083 standard
0.0237128 standard
0.0879468 standard
0.163503 standard
0.162938 standard
0.0879307 standard
0.0237058 standard
0.50354 standard
0.964858 standard
0.5043 standard
0.997145 standard
1.0 standard
0.0215868 standard
0.0671833 standard
0.104435 standard
0.140266 standard
0.108127 standard
0.0740177 standard
0.0239169 standard
0.0240344 standard
0.0743632 standard
0.10861 standard
0.123633 standard
0.101367 standard
0.0682519 standard
0.0216892 standard
0.0236838 standard
0.0868844 standard
0.161917 standard
0.163774 standard
0.0883479 standard
0.0236626 standard
0.505657 standard
0.970271 standard
0.50562 standard
0.999998 standard
1.0 standard
0.0218468 standard
0.0686289 standard
0.103064 standard
0.0916265 standard
0.139018 standard
0.0956217 standard
0.104974 standard
0.0736685 standard
0.0236219 standard
0.0237473 standard
0.073273 standard
0.105221 standard
0.126658 standard
0.103916 standard
0.0692647 standard
0.0220004 standard
0.0236385 standard
0.0874246 standard
0.16458 standard
0.161853 standard
0.0857499 standard
0.0236988 standard
View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks