Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

6-Aminohexanoic-acid

Simulation outputs:

InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9) Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.02784
Temperature 298 K
pH 7.4
InChI InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9)
Note 1 16,17?18,19
Note 2 12,13?14,15
Note 3 COSY

Sample description:

Compound Type Concentration
6-Aminohexanoic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 16 17 12 13 14 15 18 19
10 1.369 -12.4 0 0 7.749 7.749 7.749 7.749 0 0
11 0 1.369 0 0 7.749 7.749 7.749 7.749 0 0
16 0 0 2.189 -12.4 6.833 6.833 0 0 0 0
17 0 0 0 2.189 6.833 6.833 0 0 0 0
12 0 0 0 0 1.669 -12.4 0 0 0 0
13 0 0 0 0 0 1.669 0 0 0 0
14 0 0 0 0 0 0 1.584 -12.4 7.135 7.135
15 0 0 0 0 0 0 0 1.584 7.135 7.135
18 0 0 0 0 0 0 0 0 2.99 -12.4
19 0 0 0 0 0 0 0 0 0 2.99

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.00415325 standard
0.0880846 standard
0.396992 standard
0.672362 standard
0.487965 standard
0.13616 standard
0.140568 standard
0.460439 standard
0.610055 standard
0.377679 standard
0.122303 standard
0.147594 standard
0.405222 standard
0.5997 standard
0.354354 standard
0.130175 standard
0.511366 standard
1.0 standard
0.51136 standard
0.510279 standard
0.999034 standard
0.510277 standard
0.00353113 standard
0.0135401 standard
0.0350501 standard
0.0538911 standard
0.103481 standard
0.530508 standard
1.0 standard
0.526228 standard
0.204871 standard
0.107472 standard
0.404948 standard
0.727404 standard
0.372396 standard
0.368748 standard
0.716229 standard
0.366274 standard
0.00436413 standard
0.00677612 standard
0.0241003 standard
0.0517142 standard
0.0933572 standard
0.159965 standard
0.432968 standard
0.913037 standard
0.845821 standard
1.0 standard
0.628792 standard
0.270184 standard
0.0778723 standard
0.0568071 standard
0.50117 standard
0.967454 standard
0.496077 standard
0.493031 standard
0.96282 standard
0.492174 standard
0.00415713 standard
0.00610812 standard
0.02611 standard
0.042553 standard
0.0701553 standard
0.163764 standard
0.137465 standard
0.373247 standard
0.560763 standard
0.797587 standard
0.982771 standard
0.764113 standard
0.327933 standard
0.0919836 standard
0.513826 standard
1.0 standard
0.512254 standard
0.509861 standard
0.99699 standard
0.509501 standard
0.00400413 standard
0.00571013 standard
0.026921 standard
0.0407295 standard
0.0774832 standard
0.159892 standard
0.3542 standard
0.505848 standard
0.384128 standard
0.653054 standard
0.855985 standard
0.721253 standard
0.336469 standard
0.0885423 standard
0.513159 standard
1.0 standard
0.512094 standard
0.509933 standard
0.997436 standard
0.509682 standard
0.00388212 standard
0.00537913 standard
0.0282202 standard
0.0400962 standard
0.0834811 standard
0.157517 standard
0.343584 standard
0.432443 standard
0.340895 standard
0.346523 standard
0.597866 standard
0.769995 standard
0.693377 standard
0.333899 standard
0.0888061 standard
0.512732 standard
1.0 standard
0.511972 standard
0.509989 standard
0.997751 standard
0.509808 standard
0.00355813 standard
0.0464029 standard
0.0487363 standard
0.245089 standard
0.497811 standard
0.411434 standard
0.143586 standard
0.142072 standard
0.027758 standard
0.0278594 standard
0.132717 standard
0.48969 standard
0.540003 standard
0.579974 standard
0.621201 standard
0.34012 standard
0.11015 standard
0.511606 standard
1.0 standard
0.511518 standard
0.510207 standard
0.998758 standard
0.510185 standard
0.00375412 standard
0.0626964 standard
0.0626719 standard
0.319066 standard
0.59452 standard
0.452981 standard
0.13274 standard
0.127399 standard
0.017346 standard
0.135569 standard
0.476589 standard
0.566044 standard
0.346194 standard
0.189191 standard
0.163387 standard
0.460108 standard
0.596721 standard
0.349918 standard
0.12202 standard
0.511442 standard
1.0 standard
0.511417 standard
0.510255 standard
0.998942 standard
0.510248 standard
0.00395212 standard
0.0768255 standard
0.364827 standard
0.6419 standard
0.475342 standard
0.131468 standard
0.0142461 standard
0.137529 standard
0.463891 standard
0.590112 standard
0.361036 standard
0.120916 standard
0.15627 standard
0.42647 standard
0.604529 standard
0.354518 standard
0.128705 standard
0.51139 standard
1.0 standard
0.511379 standard
0.510272 standard
0.999005 standard
0.510269 standard
0.004152 standard
0.0880826 standard
0.395323 standard
0.672434 standard
0.487921 standard
0.134044 standard
0.140558 standard
0.460073 standard
0.609687 standard
0.377413 standard
0.122293 standard
0.147356 standard
0.405406 standard
0.599811 standard
0.354119 standard
0.130171 standard
0.511366 standard
1.0 standard
0.511361 standard
0.510279 standard
0.999034 standard
0.510278 standard
0.00432538 standard
0.0952052 standard
0.419342 standard
0.690455 standard
0.497619 standard
0.136864 standard
0.140566 standard
0.45314 standard
0.616945 standard
0.383855 standard
0.125423 standard
0.146214 standard
0.397577 standard
0.600309 standard
0.354937 standard
0.132596 standard
0.511354 standard
1.0 standard
0.511351 standard
0.510284 standard
0.99905 standard
0.510283 standard
0.00449825 standard
0.102256 standard
0.434541 standard
0.702295 standard
0.498981 standard
0.137205 standard
0.140859 standard
0.449591 standard
0.624964 standard
0.390065 standard
0.126413 standard
0.144925 standard
0.393061 standard
0.602033 standard
0.355705 standard
0.133597 standard
0.511346 standard
1.0 standard
0.511345 standard
0.510287 standard
0.999059 standard
0.510286 standard
0.00456825 standard
0.106222 standard
0.443268 standard
0.7093 standard
0.503228 standard
0.139506 standard
0.14016 standard
0.443931 standard
0.623421 standard
0.391228 standard
0.12799 standard
0.144119 standard
0.388071 standard
0.379759 standard
0.601126 standard
0.355834 standard
0.133732 standard
0.511343 standard
1.0 standard
0.511341 standard
0.510286 standard
0.999063 standard
0.510286 standard
0.004639 standard
0.108335 standard
0.443537 standard
0.710901 standard
0.504375 standard
0.139907 standard
0.140863 standard
0.447242 standard
0.627532 standard
0.392013 standard
0.128403 standard
0.144167 standard
0.38963 standard
0.38167 standard
0.602047 standard
0.355863 standard
0.133794 standard
0.511343 standard
1.0 standard
0.511341 standard
0.510276 standard
0.999065 standard
0.510276 standard
0.00478613 standard
0.110788 standard
0.457832 standard
0.718807 standard
0.502782 standard
0.138392 standard
0.139734 standard
0.442286 standard
0.628088 standard
0.392938 standard
0.130073 standard
0.142419 standard
0.382299 standard
0.37633 standard
0.600158 standard
0.358007 standard
0.348428 standard
0.135981 standard
0.511338 standard
1.0 standard
0.511337 standard
0.51029 standard
0.99907 standard
0.510289 standard
0.004862 standard
0.113399 standard
0.463637 standard
0.722142 standard
0.496805 standard
0.136777 standard
0.140512 standard
0.440848 standard
0.631143 standard
0.397076 standard
0.130079 standard
0.142128 standard
0.377996 standard
0.373911 standard
0.601988 standard
0.359724 standard
0.348727 standard
0.135468 standard
0.511315 standard
1.0 standard
0.511314 standard
0.510276 standard
0.999071 standard
0.510276 standard
0.113443 standard
0.463009 standard
0.72324 standard
0.504529 standard
0.140919 standard
0.139895 standard
0.438918 standard
0.631082 standard
0.397521 standard
0.130427 standard
0.141666 standard
0.376185 standard
0.37285 standard
0.601701 standard
0.360272 standard
0.350235 standard
0.136064 standard
0.511324 standard
1.0 standard
0.511323 standard
0.510274 standard
0.999073 standard
0.510275 standard
0.116052 standard
0.468816 standard
0.727934 standard
0.504669 standard
0.13902 standard
0.140056 standard
0.434508 standard
0.63106 standard
0.398766 standard
0.131392 standard
0.140879 standard
0.373204 standard
0.370343 standard
0.599154 standard
0.359061 standard
0.349598 standard
0.135835 standard
0.511336 standard
1.0 standard
0.511335 standard
0.510281 standard
0.999075 standard
0.51028 standard
0.121083 standard
0.482696 standard
0.732228 standard
0.504493 standard
0.137743 standard
0.13884 standard
0.432501 standard
0.631352 standard
0.404503 standard
0.132326 standard
0.139665 standard
0.365896 standard
0.36676 standard
0.600301 standard
0.362683 standard
0.357328 standard
0.137764 standard
0.511294 standard
1.0 standard
0.511293 standard
0.510281 standard
0.999078 standard
0.510281 standard
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