Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Suberic-acid

Simulation outputs:

InChI=1S/C8H14O4/c9-7(10)5-3-1-2-4-6-8(11)12/h1-6H2,(H,9,10)(H,11,12) Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.03496
Temperature 298 K
pH 7.4
InChI InChI=1S/C8H14O4/c9-7(10)5-3-1-2-4-6-8(11)12/h1-6H2,(H,9,10)(H,11,12)
Note 1 symmetric
Note 2 12 spins (6 and 6)

Sample description:

Compound Type Concentration
suberic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

13 14 15 16 17 18 21 22 19 20 23 24
13 1.297 -14.0 3.972 3.067 7.443 7.443 0 0 0 0 0 0
14 0 1.297 3.067 2.163 7.443 7.443 0 0 0 0 0 0
15 0 0 1.297 -14.0 0 0 0 0 7.443 7.443 0 0
16 0 0 0 1.297 0 0 0 0 7.443 7.443 0 0
17 0 0 0 0 1.538 -12.4 7.443 7.443 0 0 0 0
18 0 0 0 0 0 1.538 7.443 7.443 0 0 0 0
21 0 0 0 0 0 0 2.163 -12.4 0 0 0 0
22 0 0 0 0 0 0 0 2.163 0 0 0 0
19 0 0 0 0 0 0 0 0 1.538 -12.4 7.443 7.443
20 0 0 0 0 0 0 0 0 0 1.538 7.443 7.443
23 0 0 0 0 0 0 0 0 0 0 2.163 -12.4
24 0 0 0 0 0 0 0 0 0 0 0 2.163

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.246115 standard
0.282043 standard
0.537053 standard
0.29689 standard
0.334302 standard
0.136867 standard
0.479055 standard
0.676011 standard
0.446147 standard
0.123923 standard
0.529671 standard
1.0004 standard
0.495918 standard
0.984305 standard
1.0 standard
0.588601 standard
0.396015 standard
0.209384 standard
0.211542 standard
0.534057 standard
0.859908 standard
0.272622 standard
0.138242 standard
0.676657 standard
0.924211 standard
0.645132 standard
0.545364 standard
0.346821 standard
0.186042 standard
0.144785 standard
0.0381561 standard
0.728526 standard
1.0 standard
0.327801 standard
0.0130871 standard
0.168203 standard
0.538636 standard
0.654601 standard
0.654244 standard
0.454989 standard
0.516865 standard
0.20586 standard
0.306572 standard
0.122107 standard
0.0172881 standard
0.698395 standard
1.00001 standard
0.376853 standard
0.0141831 standard
0.00802512 standard
0.499347 standard
0.573024 standard
0.396237 standard
0.427029 standard
0.504306 standard
0.302106 standard
0.11768 standard
0.0115111 standard
0.681967 standard
1.0 standard
0.393795 standard
0.0113451 standard
0.119344 standard
0.16942 standard
0.476265 standard
0.354281 standard
0.518616 standard
0.286925 standard
0.419375 standard
0.49907 standard
0.305101 standard
0.116598 standard
0.00826412 standard
0.667622 standard
1.00001 standard
0.409154 standard
0.00906212 standard
0.17749 standard
0.450027 standard
0.300773 standard
0.364745 standard
0.144479 standard
0.409082 standard
0.528799 standard
0.359903 standard
0.112695 standard
0.576896 standard
1.00003 standard
0.460723 standard
0.20794 standard
0.498095 standard
0.294746 standard
0.347855 standard
0.13762 standard
0.439264 standard
0.603248 standard
0.409011 standard
0.117914 standard
0.5525 standard
1.00003 standard
0.476796 standard
0.231934 standard
0.278394 standard
0.525347 standard
0.296652 standard
0.340508 standard
0.137153 standard
0.461747 standard
0.648194 standard
0.436656 standard
0.121573 standard
0.541164 standard
1.00014 standard
0.485389 standard
0.2461 standard
0.282019 standard
0.53703 standard
0.296862 standard
0.334262 standard
0.136836 standard
0.480418 standard
0.676014 standard
0.446143 standard
0.123918 standard
0.529658 standard
1.0004 standard
0.495915 standard
0.254242 standard
0.283959 standard
0.543823 standard
0.296285 standard
0.328426 standard
0.00478112 standard
0.138788 standard
0.488009 standard
0.693059 standard
0.454976 standard
0.12606 standard
0.521452 standard
1.00001 standard
0.506179 standard
0.260927 standard
0.285875 standard
0.548753 standard
0.296362 standard
0.324318 standard
0.00473104 standard
0.138441 standard
0.492927 standard
0.703327 standard
0.461956 standard
0.125989 standard
0.516752 standard
1.0004 standard
0.508778 standard
0.264292 standard
0.286642 standard
0.549296 standard
0.29607 standard
0.32304 standard
0.00472604 standard
0.138031 standard
0.495946 standard
0.709236 standard
0.467596 standard
0.125895 standard
0.517116 standard
1.00115 standard
0.508617 standard
0.26571 standard
0.287061 standard
0.551957 standard
0.296499 standard
0.322094 standard
0.0047315 standard
0.138607 standard
0.496537 standard
0.712246 standard
0.471388 standard
0.127122 standard
0.516866 standard
1.0013 standard
0.507987 standard
0.270122 standard
0.288363 standard
0.55399 standard
0.296524 standard
0.320321 standard
0.00474612 standard
0.140386 standard
0.49955 standard
0.718322 standard
0.474435 standard
0.126383 standard
0.513253 standard
1.00164 standard
0.513727 standard
0.270325 standard
0.288282 standard
0.55491 standard
0.296153 standard
0.317669 standard
0.00474113 standard
0.139493 standard
0.498639 standard
0.717904 standard
0.474869 standard
0.126821 standard
0.513375 standard
1.00138 standard
0.512753 standard
0.271361 standard
0.288216 standard
0.553531 standard
0.295496 standard
0.317695 standard
0.00474801 standard
0.139124 standard
0.497344 standard
0.719663 standard
0.476357 standard
0.127062 standard
0.512937 standard
1.0005 standard
0.512942 standard
0.00331 standard
0.00825463 standard
0.279123 standard
0.289377 standard
0.554656 standard
0.295087 standard
0.314951 standard
0.00475507 standard
0.139419 standard
0.500598 standard
0.728526 standard
0.486524 standard
0.128446 standard
0.51108 standard
1.0 standard
0.511262 standard
0.00323622 standard
0.008187 standard
0.104107 standard
0.279417 standard
0.286884 standard
0.548749 standard
0.290224 standard
0.302751 standard
0.00476629 standard
0.138691 standard
0.498845 standard
0.729577 standard
0.490107 standard
0.12944 standard
0.512298 standard
1.0 standard
0.510825 standard
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