Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Isovaleric-acid

Simulation outputs:

InChI=1S/C5H10O2/c1-4(2)3-5(6)7/h4H,3H2,1-2H3,(H,6,7) Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.00327
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H10O2/c1-4(2)3-5(6)7/h4H,3H2,1-2H3,(H,6,7)
pKa 4.77@25degC
Note 1 None

Sample description:

Compound Type Concentration
isovaleric-acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

8 9 10 16 11 12 13 14 15
8 0.897 -12.5 -12.5 6.657 0 0 0 0 0
9 0 0.897 -12.5 6.657 0 0 0 0 0
10 0 0 0.897 6.657 0 0 0 0 0
16 0 0 0 1.94 6.657 6.657 6.657 7.93 7.139
11 0 0 0 0 0.897 -12.5 -12.5 0 0
12 0 0 0 0 0 0.897 -12.5 0 0
13 0 0 0 0 0 0 0.897 0 0
14 0 0 0 0 0 0 0 2.041 -13.309
15 0 0 0 0 0 0 0 0 2.041

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.99659 standard
1.00006 standard
0.00179004 standard
0.00856153 standard
0.0250957 standard
0.0450776 standard
0.043176 standard
0.0611862 standard
0.0609432 standard
0.0408553 standard
0.017349 standard
0.00702916 standard
0.373913 standard
0.22518 standard
0.73256 standard
1.0 standard
0.0629901 standard
0.0209001 standard
0.0254591 standard
0.0182991 standard
0.0307011 standard
0.0403721 standard
0.0645241 standard
0.488238 standard
0.387817 standard
0.0335171 standard
0.796161 standard
1.0 standard
0.0526442 standard
0.00638613 standard
0.0152282 standard
0.0116021 standard
0.023922 standard
0.0305151 standard
0.0240901 standard
0.054182 standard
0.0407801 standard
0.477508 standard
0.392247 standard
0.0331741 standard
0.85142 standard
0.549394 standard
1.0 standard
0.0411992 standard
0.00432313 standard
0.0129122 standard
0.00970512 standard
0.023338 standard
0.02698 standard
0.0251681 standard
0.048689 standard
0.085557 standard
0.454746 standard
0.402024 standard
0.874464 standard
0.512235 standard
1.00001 standard
0.038734 standard
0.00383912 standard
0.0120882 standard
0.00901813 standard
0.023173 standard
0.0257451 standard
0.0250191 standard
0.046913 standard
0.078419 standard
0.457035 standard
0.889696 standard
1.00001 standard
0.0361323 standard
0.00349613 standard
0.0115863 standard
0.022946 standard
0.0246274 standard
0.0255511 standard
0.047455 standard
0.074551 standard
0.454237 standard
0.216701 standard
0.966748 standard
1.00004 standard
0.00227025 standard
0.00937513 standard
0.021255 standard
0.018297 standard
0.0318921 standard
0.0406638 standard
0.032462 standard
0.0648734 standard
0.023822 standard
0.0713838 standard
0.0684582 standard
0.430033 standard
0.149683 standard
0.989148 standard
1.00007 standard
0.00198104 standard
0.00845745 standard
0.0234246 standard
0.0393495 standard
0.04092 standard
0.0450196 standard
0.060623 standard
0.0639738 standard
0.016876 standard
0.0457148 standard
0.024996 standard
0.385837 standard
0.184782 standard
0.994707 standard
1.00006 standard
0.00178702 standard
0.008434 standard
0.0250017 standard
0.0452321 standard
0.043392 standard
0.0611981 standard
0.0609853 standard
0.0408031 standard
0.0172606 standard
0.00702116 standard
0.37297 standard
0.223755 standard
0.99934 standard
1.0 standard
0.00181202 standard
0.00893669 standard
0.0263631 standard
0.0487151 standard
0.0637399 standard
0.060802 standard
0.0377823 standard
0.0149371 standard
0.00404128 standard
0.367677 standard
0.255475 standard
0.998081 standard
1.0003 standard
0.00183135 standard
0.00918271 standard
0.027378 standard
0.0507391 standard
0.0652267 standard
0.0601949 standard
0.0367891 standard
0.0140626 standard
0.00323429 standard
0.36724 standard
0.276054 standard
1.00102 standard
1.00088 standard
0.00186592 standard
0.00947366 standard
0.0284672 standard
0.0537266 standard
0.0679947 standard
0.0615204 standard
0.0366183 standard
0.0134546 standard
0.00289878 standard
0.368112 standard
0.290976 standard
1.0009 standard
1.00105 standard
0.0018765 standard
0.00954101 standard
0.0289985 standard
0.0544705 standard
0.0692463 standard
0.0609445 standard
0.0362118 standard
0.0131516 standard
0.00278903 standard
0.367212 standard
0.295116 standard
1.00092 standard
0.995917 standard
0.00188775 standard
0.00969766 standard
0.0288918 standard
0.0549643 standard
0.0701178 standard
0.0614071 standard
0.0362364 standard
0.0130217 standard
0.00270896 standard
0.367665 standard
0.300909 standard
0.997858 standard
1.00066 standard
0.0019225 standard
0.00980809 standard
0.0295447 standard
0.0570903 standard
0.0717774 standard
0.062233 standard
0.0360266 standard
0.0128733 standard
0.00261716 standard
0.368813 standard
0.310003 standard
0.996376 standard
1.0008 standard
0.00194527 standard
0.0100086 standard
0.0299256 standard
0.0578448 standard
0.0725983 standard
0.0621563 standard
0.0358316 standard
0.0128459 standard
0.00257713 standard
0.373094 standard
0.315234 standard
0.999539 standard
1.00154 standard
0.0019552 standard
0.0100571 standard
0.0307023 standard
0.0582344 standard
0.07387 standard
0.0624577 standard
0.0357934 standard
0.0126559 standard
0.002549 standard
0.37492 standard
0.319845 standard
1.00041 standard
1.00172 standard
0.00199525 standard
0.0103617 standard
0.0311188 standard
0.0600005 standard
0.0755935 standard
0.063646 standard
0.0360347 standard
0.0127187 standard
0.00252333 standard
0.376173 standard
0.329902 standard
1.00197 standard
0.996676 standard
0.00207134 standard
0.0106571 standard
0.0327848 standard
0.0633023 standard
0.0783095 standard
0.0656415 standard
0.0364374 standard
0.0128181 standard
0.00250431 standard
0.380538 standard
0.343382 standard
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