Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download entry NMR-STAR

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NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Pimelic-acid

Simulation outputs:

InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11) Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01216
Temperature 298 K
pH 7.4
InChI InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)
Note 1 None

Sample description:

Compound Type Concentration
Pimelic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
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Spin System Matrix

18 19 20 21 14 15 16 17 12 13
18 2.169 -12.4 0 0 7.482 7.482 0 0 0 0
19 0 2.169 0 0 7.482 7.482 0 0 0 0
20 0 0 2.169 -12.4 0 0 7.482 7.482 0 0
21 0 0 0 2.169 0 0 7.482 7.482 0 0
14 0 0 0 0 1.55 -12.4 0 0 7.631 7.631
15 0 0 0 0 0 1.55 0 0 7.631 7.631
16 0 0 0 0 0 0 1.55 -12.4 7.631 7.631
17 0 0 0 0 0 0 0 1.55 7.631 7.631
12 0 0 0 0 0 0 0 0 1.288 -12.4
13 0 0 0 0 0 0 0 0 0 1.288

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.0596046 standard
0.21095 standard
0.328478 standard
0.244507 standard
0.0819634 standard
0.106942 standard
0.364981 standard
0.481113 standard
0.300468 standard
0.094265 standard
0.518728 standard
1.0 standard
0.518723 standard
0.413962 standard
0.769059 standard
0.247164 standard
0.54536 standard
1.0 standard
0.517422 standard
0.00551112 standard
0.114781 standard
0.258437 standard
0.446146 standard
0.573926 standard
0.465327 standard
0.228948 standard
0.52389 standard
1.0 standard
0.519431 standard
0.00514712 standard
0.0187251 standard
0.0904701 standard
0.212638 standard
0.331722 standard
0.497082 standard
0.443711 standard
0.230061 standard
0.520844 standard
1.0 standard
0.519274 standard
0.00506412 standard
0.0202671 standard
0.0995242 standard
0.104008 standard
0.210074 standard
0.270864 standard
0.263957 standard
0.477095 standard
0.445043 standard
0.233521 standard
0.520261 standard
1.0 standard
0.519196 standard
0.00502112 standard
0.0218531 standard
0.110806 standard
0.21563 standard
0.247039 standard
0.235769 standard
0.463536 standard
0.444787 standard
0.236535 standard
0.519889 standard
1.0 standard
0.51913 standard
0.0432201 standard
0.157325 standard
0.268107 standard
0.221864 standard
0.090434 standard
0.117691 standard
0.400161 standard
0.456825 standard
0.258431 standard
0.0836991 standard
0.518924 standard
1.0 standard
0.518837 standard
0.0504574 standard
0.185602 standard
0.301194 standard
0.233682 standard
0.085105 standard
0.111022 standard
0.382569 standard
0.47188 standard
0.27954 standard
0.0890172 standard
0.518789 standard
1.0 standard
0.518764 standard
0.0559618 standard
0.201119 standard
0.318518 standard
0.240602 standard
0.0829871 standard
0.108408 standard
0.372177 standard
0.477695 standard
0.292404 standard
0.092285 standard
0.518747 standard
1.0 standard
0.518736 standard
0.0596408 standard
0.21108 standard
0.328883 standard
0.244672 standard
0.0820084 standard
0.107005 standard
0.365105 standard
0.480295 standard
0.300051 standard
0.0942761 standard
0.518728 standard
1.0 standard
0.518723 standard
0.0620327 standard
0.21737 standard
0.335314 standard
0.246059 standard
0.0811325 standard
0.105777 standard
0.359668 standard
0.481146 standard
0.305231 standard
0.0953828 standard
0.518717 standard
1.0 standard
0.518713 standard
0.0640391 standard
0.222649 standard
0.339749 standard
0.2481 standard
0.0802471 standard
0.105348 standard
0.355853 standard
0.4822 standard
0.309172 standard
0.0962675 standard
0.518712 standard
1.0 standard
0.518711 standard
0.0648595 standard
0.224708 standard
0.341898 standard
0.248378 standard
0.0797549 standard
0.105088 standard
0.35454 standard
0.481733 standard
0.310579 standard
0.0967494 standard
0.518707 standard
1.0 standard
0.518706 standard
0.065519 standard
0.225767 standard
0.343824 standard
0.248426 standard
0.079618 standard
0.104708 standard
0.35298 standard
0.480975 standard
0.311293 standard
0.0968433 standard
0.518708 standard
1.0 standard
0.518707 standard
0.0664005 standard
0.229286 standard
0.345778 standard
0.248789 standard
0.0788593 standard
0.104284 standard
0.35061 standard
0.481456 standard
0.313806 standard
0.0974113 standard
0.518705 standard
1.0 standard
0.518704 standard
0.0677424 standard
0.230832 standard
0.346689 standard
0.247459 standard
0.078525 standard
0.104058 standard
0.348808 standard
0.481272 standard
0.314575 standard
0.097559 standard
0.518701 standard
1.0 standard
0.518701 standard
0.0683408 standard
0.232445 standard
0.347465 standard
0.24734 standard
0.0779263 standard
0.103861 standard
0.348542 standard
0.481159 standard
0.315391 standard
0.0977545 standard
0.518699 standard
1.0 standard
0.518699 standard
0.0689796 standard
0.235545 standard
0.34803 standard
0.246013 standard
0.0775878 standard
0.102988 standard
0.34315 standard
0.481839 standard
0.320035 standard
0.0986203 standard
0.518689 standard
1.0 standard
0.518688 standard
0.0700078 standard
0.237372 standard
0.349761 standard
0.246671 standard
0.0774439 standard
0.102588 standard
0.340928 standard
0.481098 standard
0.321523 standard
0.0989752 standard
0.518702 standard
1.0 standard
0.518702 standard
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