Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

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Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

2-Deoxyuridine

Simulation outputs:

InChI=1S/C9H12N2O5/c12-4-6-5(13)3-8(16-6)11-2-1-7(14)10-9(11)15/h1-2,5-6,8,12-13H,3-4H2,(H,10,14,15)/t5-,6+,8+/m0/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.00895
Temperature 298 K
pH 7.4
InChI InChI=1S/C9H12N2O5/c12-4-6-5(13)3-8(16-6)11-2-1-7(14)10-9(11)15/h1-2,5-6,8,12-13H,3-4H2,(H,10,14,15)/t5-,6+,8+/m0/s1
Note 1 17,18?

Sample description:

Compound Type Concentration
2'-Deoxyuridine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

19 20 23 24 25 17 18 21 22
19 2.407 -14.133 4.029 0 6.7 0 0 0 0
20 0 2.362 7.058 0 6.7 0 0 0 0
23 0 0 4.451 4.277 0 0 0 0 0
24 0 0 0 4.038 0 0 0 5.033 3.463
25 0 0 0 0 6.271 0 0 0 0
17 0 0 0 0 0 7.841 8.188 0 0
18 0 0 0 0 0 0 5.877 0 0
21 0 0 0 0 0 0 0 3.747 -12.432
22 0 0 0 0 0 0 0 0 3.824

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.124386 standard
0.233212 standard
0.452741 standard
0.730754 standard
0.738709 standard
0.469599 standard
0.449126 standard
0.409702 standard
0.177523 standard
0.145287 standard
0.149258 standard
0.118483 standard
0.329056 standard
0.355461 standard
0.610629 standard
0.647853 standard
0.635403 standard
0.674326 standard
0.350397 standard
0.359068 standard
0.298709 standard
0.605906 standard
0.57545 standard
0.274965 standard
0.274086 standard
0.527012 standard
0.400888 standard
0.398943 standard
0.52983 standard
0.268732 standard
0.999999 standard
1.0 standard
0.48096 standard
0.932512 standard
0.48092 standard
0.99994 standard
0.99994 standard
0.312863 standard
0.550249 standard
0.412745 standard
0.412712 standard
1.0 standard
0.31154 standard
0.295547 standard
0.206699 standard
0.11872 standard
0.160565 standard
0.235943 standard
0.17331 standard
0.0788331 standard
0.35211 standard
0.438452 standard
0.219447 standard
0.362382 standard
0.176344 standard
0.427307 standard
0.349151 standard
0.00880913 standard
0.345651 standard
0.631091 standard
0.451646 standard
0.0164901 standard
0.0212461 standard
0.0327981 standard
0.375839 standard
0.463725 standard
1.0 standard
0.207856 standard
0.308685 standard
0.227526 standard
0.108711 standard
0.148384 standard
0.253218 standard
0.208832 standard
0.0952245 standard
0.405843 standard
0.465694 standard
0.223253 standard
0.40592 standard
0.202153 standard
0.462668 standard
0.404328 standard
0.0126471 standard
0.0229401 standard
0.392429 standard
0.765333 standard
0.533687 standard
0.0210721 standard
0.03441 standard
0.048443 standard
0.452208 standard
0.567416 standard
1.0 standard
0.240391 standard
0.355389 standard
0.283768 standard
0.130314 standard
0.167384 standard
0.296979 standard
0.260028 standard
0.120605 standard
0.498154 standard
0.5517 standard
0.26025 standard
0.490079 standard
0.249072 standard
0.550007 standard
0.497113 standard
0.015768 standard
0.0270711 standard
0.429497 standard
0.869308 standard
0.597792 standard
0.024835 standard
0.0449312 standard
0.0609412 standard
0.506905 standard
0.659062 standard
1.0 standard
0.07154 standard
0.24078 standard
0.401349 standard
0.327195 standard
0.148997 standard
0.184942 standard
0.333696 standard
0.300403 standard
0.140972 standard
0.570296 standard
0.624345 standard
0.289723 standard
0.558104 standard
0.288903 standard
0.622908 standard
0.569357 standard
0.018696 standard
0.032956 standard
0.452589 standard
0.951059 standard
0.646322 standard
0.028422 standard
0.055894 standard
0.0735712 standard
0.546802 standard
0.757928 standard
1.00001 standard
0.920844 standard
0.0779694 standard
0.0899822 standard
0.246291 standard
0.437781 standard
0.36344 standard
0.164451 standard
0.198822 standard
0.362367 standard
0.33305 standard
0.157979 standard
0.629283 standard
0.68263 standard
0.317558 standard
0.612517 standard
0.31694 standard
0.681402 standard
0.628445 standard
0.053714 standard
0.0906986 standard
0.474523 standard
0.559514 standard
1.0 standard
0.637384 standard
0.611963 standard
0.573835 standard
0.063705 standard
0.069743 standard
0.0387991 standard
0.172492 standard
0.200747 standard
0.691013 standard
0.888562 standard
0.801282 standard
0.84765 standard
0.191092 standard
0.196532 standard
0.302161 standard
0.604279 standard
0.54267 standard
0.249007 standard
0.265576 standard
0.508165 standard
0.403694 standard
0.501862 standard
0.244611 standard
0.92914 standard
0.967557 standard
0.456654 standard
0.884909 standard
0.456554 standard
0.967162 standard
0.928809 standard
0.068191 standard
0.121576 standard
0.378148 standard
1.00001 standard
0.522342 standard
0.750549 standard
0.390632 standard
0.0785932 standard
0.0843854 standard
0.0569187 standard
0.205191 standard
0.2292 standard
0.549456 standard
0.619997 standard
0.580433 standard
0.635517 standard
0.222604 standard
0.229671 standard
0.250613 standard
0.507916 standard
0.471341 standard
0.219495 standard
0.226336 standard
0.436381 standard
0.327466 standard
0.319964 standard
0.436681 standard
0.213811 standard
0.817468 standard
0.817484 standard
0.39324 standard
0.76233 standard
0.393214 standard
0.817254 standard
0.817254 standard
0.106181 standard
0.195522 standard
0.454062 standard
0.805056 standard
0.507142 standard
0.731329 standard
0.511806 standard
0.43514 standard
0.167317 standard
0.122799 standard
0.128519 standard
0.0963667 standard
0.297848 standard
0.325551 standard
0.636043 standard
0.688114 standard
0.664412 standard
0.713313 standard
0.318516 standard
0.327525 standard
0.299052 standard
0.612495 standard
0.574725 standard
0.272849 standard
0.275224 standard
0.532891 standard
0.399883 standard
0.390875 standard
0.531345 standard
0.264181 standard
0.999994 standard
1.0 standard
0.480959 standard
0.932581 standard
0.480946 standard
0.999766 standard
0.999766 standard
0.124405 standard
0.233241 standard
0.454148 standard
0.730766 standard
0.732142 standard
0.469339 standard
0.448982 standard
0.409628 standard
0.177501 standard
0.145294 standard
0.149268 standard
0.118504 standard
0.329088 standard
0.355486 standard
0.610578 standard
0.647789 standard
0.63534 standard
0.674255 standard
0.350791 standard
0.359645 standard
0.298672 standard
0.605806 standard
0.575358 standard
0.274935 standard
0.274061 standard
0.526973 standard
0.400802 standard
0.398856 standard
0.529791 standard
0.268708 standard
0.999999 standard
1.0 standard
0.480948 standard
0.932506 standard
0.480908 standard
0.999941 standard
0.99994 standard
0.138975 standard
0.262427 standard
0.454161 standard
0.688748 standard
0.388986 standard
0.391509 standard
0.431913 standard
0.423445 standard
0.391048 standard
0.188382 standard
0.164016 standard
0.166343 standard
0.135881 standard
0.351586 standard
0.376572 standard
0.592182 standard
0.62037 standard
0.615131 standard
0.647424 standard
0.373933 standard
0.382207 standard
0.298951 standard
0.602327 standard
0.57966 standard
0.272835 standard
0.270243 standard
0.52682 standard
0.405817 standard
0.405736 standard
0.526643 standard
0.270289 standard
1.0 standard
1.0 standard
0.480606 standard
0.932342 standard
0.481009 standard
0.99996 standard
0.99996 standard
0.150698 standard
0.284073 standard
0.451854 standard
0.659092 standard
0.354242 standard
0.360309 standard
0.40914 standard
0.403761 standard
0.376589 standard
0.198367 standard
0.179129 standard
0.180424 standard
0.150089 standard
0.367765 standard
0.391683 standard
0.577694 standard
0.599653 standard
0.599111 standard
0.626842 standard
0.392644 standard
0.398312 standard
0.296622 standard
0.60347 standard
0.575302 standard
0.27368 standard
0.269914 standard
0.525076 standard
0.405835 standard
0.405843 standard
0.525085 standard
0.269912 standard
1.0 standard
1.0 standard
0.480323 standard
0.931906 standard
0.480793 standard
0.999727 standard
0.999727 standard
0.155644 standard
0.295813 standard
0.453753 standard
0.646663 standard
0.345048 standard
0.352619 standard
0.400723 standard
0.396412 standard
0.370743 standard
0.201303 standard
0.184236 standard
0.184935 standard
0.156238 standard
0.374371 standard
0.395852 standard
0.571921 standard
0.591547 standard
0.594105 standard
0.619931 standard
0.406072 standard
0.406176 standard
0.296666 standard
0.600486 standard
0.580136 standard
0.275684 standard
0.270859 standard
0.524093 standard
0.407925 standard
0.40861 standard
0.526431 standard
0.27033 standard
1.0 standard
1.0 standard
0.480405 standard
0.931578 standard
0.480405 standard
0.999976 standard
0.999976 standard
0.160254 standard
0.304674 standard
0.456755 standard
0.63022 standard
0.337858 standard
0.3458 standard
0.395625 standard
0.391648 standard
0.365195 standard
0.20675 standard
0.189706 standard
0.189929 standard
0.161363 standard
0.379626 standard
0.395501 standard
0.567497 standard
0.584969 standard
0.593976 standard
0.611914 standard
0.410768 standard
0.408776 standard
0.294377 standard
0.602728 standard
0.588856 standard
0.279447 standard
0.270234 standard
0.523337 standard
0.412309 standard
0.412308 standard
0.523324 standard
0.270242 standard
1.0 standard
1.0 standard
0.480182 standard
0.931739 standard
0.480718 standard
0.999979 standard
0.999979 standard
0.168363 standard
0.320524 standard
0.45979 standard
0.618161 standard
0.327266 standard
0.336249 standard
0.383621 standard
0.381348 standard
0.356817 standard
0.211742 standard
0.200432 standard
0.200107 standard
0.171049 standard
0.398359 standard
0.406318 standard
0.559808 standard
0.564343 standard
0.587515 standard
0.592345 standard
0.421345 standard
0.414892 standard
0.284863 standard
0.592052 standard
0.592584 standard
0.284601 standard
0.271016 standard
0.524176 standard
0.41376 standard
0.413754 standard
0.524174 standard
0.271002 standard
1.0 standard
1.0 standard
0.481497 standard
0.933722 standard
0.481497 standard
0.999671 standard
0.999671 standard
0.171538 standard
0.326423 standard
0.45736 standard
0.608963 standard
0.322239 standard
0.331193 standard
0.379368 standard
0.377601 standard
0.352994 standard
0.216018 standard
0.205164 standard
0.204543 standard
0.174631 standard
0.402093 standard
0.410378 standard
0.565233 standard
0.559792 standard
0.582189 standard
0.586917 standard
0.424903 standard
0.418652 standard
0.286192 standard
0.584392 standard
0.595709 standard
0.285046 standard
0.270019 standard
0.523856 standard
0.415061 standard
0.413522 standard
0.521978 standard
0.271326 standard
1.0 standard
1.0 standard
0.480886 standard
0.932498 standard
0.480886 standard
0.999986 standard
0.999986 standard
0.174729 standard
0.332083 standard
0.462164 standard
0.601097 standard
0.318272 standard
0.328165 standard
0.374382 standard
0.37242 standard
0.349394 standard
0.219021 standard
0.208456 standard
0.207881 standard
0.178689 standard
0.405887 standard
0.413944 standard
0.561462 standard
0.556038 standard
0.578483 standard
0.583165 standard
0.429001 standard
0.42287 standard
0.284656 standard
0.585126 standard
0.585124 standard
0.284651 standard
0.270108 standard
0.523985 standard
0.415421 standard
0.416262 standard
0.522732 standard
0.271065 standard
0.999671 standard
0.999672 standard
0.480411 standard
0.932266 standard
0.481083 standard
1.0 standard
1.0 standard
0.180216 standard
0.346139 standard
0.459756 standard
0.587364 standard
0.311311 standard
0.320556 standard
0.365191 standard
0.365097 standard
0.343779 standard
0.22314 standard
0.215418 standard
0.213741 standard
0.184558 standard
0.413048 standard
0.421137 standard
0.554256 standard
0.548456 standard
0.570817 standard
0.575392 standard
0.435663 standard
0.429782 standard
0.28473 standard
0.593037 standard
0.593063 standard
0.284728 standard
0.270441 standard
0.524744 standard
0.41265 standard
0.41186 standard
0.52032 standard
0.271246 standard
1.0 standard
1.0 standard
0.480356 standard
0.932303 standard
0.481091 standard
0.99999 standard
0.99999 standard
0.188883 standard
0.356579 standard
0.463367 standard
0.573711 standard
0.300474 standard
0.312277 standard
0.355427 standard
0.354887 standard
0.33346 standard
0.230866 standard
0.226576 standard
0.224727 standard
0.194819 standard
0.423137 standard
0.431447 standard
0.544038 standard
0.537691 standard
0.560092 standard
0.564472 standard
0.447374 standard
0.440535 standard
0.28476 standard
0.59038 standard
0.590378 standard
0.284757 standard
0.270585 standard
0.524535 standard
0.4129 standard
0.411976 standard
0.518615 standard
0.271555 standard
1.0 standard
1.0 standard
0.480649 standard
0.932121 standard
0.480649 standard
0.999545 standard
0.999545 standard
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