Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Alpha-naphthoic-acid

Simulation outputs:

InChI=1S/C11H8O2/c12-11(13)10-7-3-5-8-4-1-2-6-9(8)10/h1-7H,(H,12,13) Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.01899
Temperature 298 K
pH 7.4
InChI InChI=1S/C11H8O2/c12-11(13)10-7-3-5-8-4-1-2-6-9(8)10/h1-7H,(H,12,13)
pKa 3.69for1-Naphthalenecarboxylicacid
pKa 4.16for2-Naphthalenecarboxylicacid
Note 1 qm
Note 2 2D HSQC- mainly for shifts

Sample description:

Compound Type Concentration
1-Naphthoic acid Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

14 15 19 17 20 16 18
14 7.568 7.53 0 8.303 0 0 0
15 0 7.602 9.446 0 0 0 0
19 0 0 8.213 0 0 0 0
17 0 0 0 7.96 0 0 0
20 0 0 0 0 7.618 7.901 0
16 0 0 0 0 0 7.536 8.226
18 0 0 0 0 0 0 7.946

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
2.125e-06 standard
0.222958 standard
0.541342 standard
0.282969 standard
0.45315 standard
0.514113 standard
0.812197 standard
1.00008 standard
0.537264 standard
0.602106 standard
0.704226 standard
0.72476 standard
0.515428 standard
0.496297 standard
0.464172 standard
0.000110125 standard
0.391785 standard
1.0 standard
0.525888 standard
0.308304 standard
0.358842 standard
0.131216 standard
0.122138 standard
5.3125e-05 standard
0.483541 standard
1.0 standard
0.154371 standard
0.489755 standard
0.294641 standard
0.303576 standard
0.24847 standard
0.129195 standard
0.145391 standard
3.1125e-05 standard
0.08116 standard
0.485347 standard
1.0 standard
0.503726 standard
0.329254 standard
0.092534 standard
0.225467 standard
0.141753 standard
0.15892 standard
2.5125e-05 standard
0.084677 standard
0.472295 standard
1.0 standard
0.506758 standard
0.343542 standard
0.224488 standard
0.146203 standard
0.165733 standard
2.0125e-05 standard
0.0892821 standard
0.472404 standard
1.0 standard
0.511671 standard
0.361059 standard
0.228566 standard
0.153743 standard
0.174842 standard
7.125e-06 standard
0.153342 standard
0.46808 standard
0.797153 standard
0.702313 standard
1.00002 standard
0.345746 standard
0.564018 standard
0.499953 standard
0.58249 standard
0.338169 standard
0.295317 standard
4.125e-06 standard
0.183814 standard
0.516078 standard
0.673291 standard
0.682661 standard
1.00001 standard
0.486114 standard
0.558113 standard
0.531013 standard
0.584486 standard
0.43203 standard
0.396243 standard
0.363873 standard
2.125e-06 standard
0.222942 standard
0.541475 standard
0.281696 standard
0.452642 standard
0.51404 standard
0.812261 standard
1.00008 standard
0.537206 standard
0.602076 standard
0.70427 standard
0.724777 standard
0.515407 standard
0.496258 standard
0.464128 standard
2.125e-06 standard
0.245669 standard
0.566983 standard
0.559423 standard
0.527786 standard
0.545858 standard
0.53879 standard
0.657855 standard
0.819107 standard
0.366545 standard
0.52536 standard
0.618095 standard
1.00001 standard
0.561188 standard
0.551375 standard
0.524058 standard
1.125e-06 standard
0.224859 standard
0.503221 standard
0.353933 standard
0.24602 standard
0.472226 standard
0.40553 standard
0.397171 standard
0.482199 standard
0.666123 standard
0.336302 standard
0.460991 standard
0.540192 standard
1.0 standard
0.500816 standard
0.501761 standard
0.47852 standard
1.125e-06 standard
0.285417 standard
0.623519 standard
0.401322 standard
0.268537 standard
0.586006 standard
0.466601 standard
0.456345 standard
0.55242 standard
0.839798 standard
0.57409 standard
0.66288 standard
1.00003 standard
0.626318 standard
0.628068 standard
0.603036 standard
1.125e-06 standard
0.322289 standard
0.697221 standard
0.438798 standard
0.297116 standard
0.661412 standard
0.508579 standard
0.49911 standard
0.602864 standard
1.00013 standard
0.644539 standard
0.738899 standard
0.95042 standard
0.966382 standard
0.700929 standard
0.704301 standard
0.681493 standard
1.125e-06 standard
0.305845 standard
0.655905 standard
0.406622 standard
0.279737 standard
0.622606 standard
0.469501 standard
0.463426 standard
0.552884 standard
1.00007 standard
0.608328 standard
0.692412 standard
0.806186 standard
0.827596 standard
0.658668 standard
0.653241 standard
0.65357 standard
1.125e-06 standard
0.336039 standard
0.713277 standard
0.429967 standard
0.306595 standard
0.673644 standard
0.490687 standard
0.484462 standard
0.586728 standard
1.0 standard
0.663899 standard
0.746453 standard
0.792686 standard
0.819528 standard
0.714488 standard
0.710459 standard
0.70801 standard
1.125e-06 standard
0.369215 standard
0.774185 standard
0.466104 standard
0.337026 standard
0.742504 standard
0.527722 standard
0.520737 standard
0.632763 standard
1.00006 standard
0.728296 standard
0.813178 standard
0.844767 standard
0.872898 standard
0.780756 standard
0.775416 standard
0.77634 standard
1.125e-06 standard
0.397632 standard
0.813138 standard
0.48624 standard
0.357909 standard
0.776444 standard
0.549504 standard
0.540757 standard
0.657659 standard
1.00068 standard
0.769473 standard
0.846266 standard
0.882984 standard
0.905161 standard
0.821785 standard
0.819692 standard
0.819684 standard
0.422688 standard
0.863939 standard
0.499036 standard
0.389002 standard
0.821096 standard
0.556643 standard
0.557946 standard
0.694688 standard
0.498697 standard
1.0001 standard
0.81492 standard
0.883022 standard
0.915953 standard
0.916175 standard
0.881868 standard
0.863907 standard
0.863898 standard
0.44683 standard
0.907021 standard
0.512607 standard
0.41484 standard
0.860567 standard
0.562687 standard
0.563823 standard
0.709713 standard
0.454951 standard
1.00158 standard
0.860355 standard
0.920562 standard
0.938396 standard
0.938475 standard
0.919448 standard
0.905112 standard
0.903875 standard
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