Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Pyridoxamine-5-phosphate

Simulation outputs:

InChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14) Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.03191
Temperature 298 K
pH 7.4
InChI InChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
Note 1 overlap with water 23,24 inaccurate shift
Note 2 estimated 31P Jcoupling to 23,24 from 2D HSQC (7Hz)
Note 3 could change temperature of 1D
Note 4
Additional coupling constants
Spin Coupling constant
23 7.000
24 7.000

Sample description:

Compound Type Concentration
Pyridoxamine phosphate Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

17 18 19 22 20 21 23 24
17 2.461 -14.9 -14.9 0 0 0 0 0
18 0 2.461 -14.9 0 0 0 0 0
19 0 0 2.461 0 0 0 0 0
22 0 0 0 7.645 0 0 0 0
20 0 0 0 0 4.315 -12.4 0 0
21 0 0 0 0 0 4.315 0 0
23 0 0 0 0 0 0 4.84 -12.4
24 0 0 0 0 0 0 0 4.84

Spectra

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PPM Amplitude Peak Type
1.0 standard
0.888688 standard
0.472642 standard
0.472638 standard
0.444435 standard
1.0 standard
0.895529 standard
0.481751 standard
0.477151 standard
0.444341 standard
1.0 standard
0.891313 standard
0.476118 standard
0.474784 standard
0.444366 standard
1.0 standard
0.890416 standard
0.474471 standard
0.473912 standard
0.44442 standard
1.0 standard
0.889845 standard
0.473793 standard
0.473401 standard
0.444351 standard
1.0 standard
0.890043 standard
0.473813 standard
0.473528 standard
0.444499 standard
1.0 standard
0.88926 standard
0.472756 standard
0.47272 standard
0.444438 standard
1.0 standard
0.888767 standard
0.472636 standard
0.472625 standard
0.444386 standard
1.0 standard
0.88896 standard
0.472603 standard
0.4726 standard
0.444415 standard
1.0 standard
0.888772 standard
0.472646 standard
0.472644 standard
0.444315 standard
1.0 standard
0.888872 standard
0.47251 standard
0.472509 standard
0.444423 standard
1.0 standard
0.888736 standard
0.472457 standard
0.472457 standard
0.444397 standard
1.0 standard
0.888825 standard
0.472733 standard
0.472732 standard
0.444515 standard
1.0 standard
0.888536 standard
0.472438 standard
0.472438 standard
0.444257 standard
1.0 standard
0.888704 standard
0.472477 standard
0.472477 standard
0.444302 standard
1.0 standard
0.888846 standard
0.472866 standard
0.472866 standard
0.444538 standard
1.0 standard
0.88866 standard
0.472451 standard
0.472451 standard
0.444377 standard
1.0 standard
0.888716 standard
0.472517 standard
0.472517 standard
0.444341 standard
1.0 standard
0.888756 standard
0.472586 standard
0.472586 standard
0.44431 standard
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