Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Trans-4-hydroxy-L-proline

Simulation outputs:

InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.02756
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1
pKa 1.82
pKa 9.66
Note 1 None

Sample description:

Compound Type Concentration
4-Hydroxyproline Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 14 12 13 15
10 2.145 -14.049 4.87 0 0 9.42
11 0 2.422 2.0 0 0 8.594
14 0 0 4.656 1.765 3.768 0
12 0 0 0 3.356 -12.625 0
13 0 0 0 0 3.467 0
15 0 0 0 0 0 4.336

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

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PPM Amplitude Peak Type
0.307962 standard
0.316074 standard
0.324893 standard
0.661123 standard
0.39249 standard
0.384949 standard
0.375703 standard
0.410828 standard
0.414665 standard
0.423079 standard
0.431075 standard
0.360552 standard
0.34984 standard
0.34018 standard
0.336693 standard
0.588198 standard
0.594165 standard
0.92968 standard
0.924416 standard
0.840216 standard
0.837623 standard
0.538379 standard
0.539464 standard
0.668486 standard
1.00002 standard
0.668498 standard
0.239797 standard
0.429049 standard
0.518482 standard
0.606449 standard
0.610781 standard
0.514614 standard
0.428677 standard
0.239692 standard
0.033025 standard
0.029675 standard
0.048951 standard
0.251594 standard
0.316189 standard
0.314292 standard
0.320776 standard
0.334554 standard
0.591048 standard
0.343518 standard
0.062218 standard
0.037235 standard
0.0484454 standard
0.035568 standard
0.0199561 standard
0.0337511 standard
1.0 standard
0.854517 standard
0.818443 standard
0.019625 standard
0.0361332 standard
0.349626 standard
0.354467 standard
0.351263 standard
0.134968 standard
0.468318 standard
0.290339 standard
0.278841 standard
0.213795 standard
0.084604 standard
0.0617163 standard
0.058879 standard
0.0796757 standard
0.314831 standard
0.287743 standard
0.569278 standard
0.351244 standard
0.361089 standard
0.333551 standard
0.343284 standard
0.0892862 standard
0.0670063 standard
0.0798824 standard
0.067277 standard
0.040684 standard
0.0603953 standard
0.86076 standard
1.0 standard
0.959694 standard
0.755815 standard
0.0390351 standard
0.0626546 standard
0.388769 standard
0.453065 standard
0.452284 standard
0.302335 standard
0.13792 standard
0.261049 standard
0.30758 standard
0.311581 standard
0.311008 standard
0.235695 standard
0.106912 standard
0.0617587 standard
0.0601242 standard
0.0746639 standard
0.249841 standard
0.208407 standard
0.222325 standard
0.426262 standard
0.24397 standard
0.235047 standard
0.24176 standard
0.0822695 standard
0.0684957 standard
0.0767464 standard
0.0692272 standard
0.0513648 standard
0.066022 standard
0.567046 standard
1.00001 standard
0.527558 standard
0.0466384 standard
0.0659271 standard
0.292652 standard
0.367853 standard
0.367671 standard
0.237832 standard
0.0975114 standard
0.18843 standard
0.169453 standard
0.229596 standard
0.23736 standard
0.236585 standard
0.163181 standard
0.175588 standard
0.0865901 standard
0.0862841 standard
0.0847178 standard
0.102479 standard
0.319083 standard
0.255322 standard
0.268038 standard
0.305262 standard
0.288295 standard
0.276075 standard
0.288718 standard
0.296405 standard
0.111095 standard
0.0955577 standard
0.104699 standard
0.0964061 standard
0.0771582 standard
0.0954771 standard
0.687428 standard
1.0 standard
0.643756 standard
0.070077 standard
0.0944337 standard
0.366473 standard
0.473363 standard
0.473411 standard
0.304698 standard
0.12247 standard
0.233798 standard
0.300349 standard
0.2993 standard
0.221797 standard
0.110924 standard
0.123157 standard
0.120175 standard
0.143427 standard
0.422769 standard
0.323921 standard
0.340196 standard
0.35453 standard
0.344932 standard
0.348188 standard
0.368678 standard
0.377599 standard
0.153606 standard
0.135369 standard
0.144915 standard
0.136268 standard
0.117171 standard
0.140472 standard
0.871544 standard
1.00002 standard
0.9728 standard
0.816787 standard
0.10635 standard
0.137728 standard
0.472545 standard
0.626717 standard
0.626912 standard
0.404877 standard
0.158752 standard
0.301297 standard
0.391659 standard
0.396756 standard
0.288853 standard
0.14866 standard
0.225701 standard
0.229373 standard
0.245355 standard
0.578357 standard
0.383722 standard
0.390887 standard
0.385484 standard
0.40115 standard
0.407115 standard
0.426107 standard
0.434363 standard
0.274588 standard
0.26011 standard
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0.254111 standard
0.331444 standard
0.350805 standard
1.00007 standard
0.98395 standard
0.922418 standard
0.901098 standard
0.307151 standard
0.321964 standard
0.615907 standard
0.878473 standard
0.878476 standard
0.566674 standard
0.210791 standard
0.384768 standard
0.451146 standard
0.536343 standard
0.535397 standard
0.453188 standard
0.384797 standard
0.211146 standard
0.277886 standard
0.284414 standard
0.294679 standard
0.646232 standard
0.403166 standard
0.395382 standard
0.387236 standard
0.423961 standard
0.428684 standard
0.432312 standard
0.440272 standard
0.327005 standard
0.314576 standard
0.307222 standard
0.302967 standard
0.471569 standard
0.483778 standard
1.00009 standard
0.989226 standard
0.909119 standard
0.89873 standard
0.432608 standard
0.440045 standard
0.649013 standard
0.97635 standard
0.649068 standard
0.234488 standard
0.418288 standard
0.500094 standard
0.591145 standard
0.591329 standard
0.499709 standard
0.417139 standard
0.233837 standard
0.298372 standard
0.305947 standard
0.315357 standard
0.658684 standard
0.3987 standard
0.390886 standard
0.381908 standard
0.41772 standard
0.4219 standard
0.429436 standard
0.43744 standard
0.349238 standard
0.337662 standard
0.331007 standard
0.327316 standard
0.546514 standard
0.554688 standard
0.959533 standard
0.952194 standard
0.871741 standard
0.866466 standard
0.499786 standard
0.50307 standard
0.664748 standard
1.00002 standard
0.664848 standard
0.23907 standard
0.427288 standard
0.511054 standard
0.60783 standard
0.607827 standard
0.511045 standard
0.427274 standard
0.239053 standard
0.307885 standard
0.316211 standard
0.325099 standard
0.661225 standard
0.39253 standard
0.384989 standard
0.375746 standard
0.412852 standard
0.416618 standard
0.42313 standard
0.43111 standard
0.360591 standard
0.349881 standard
0.340223 standard
0.336736 standard
0.591959 standard
0.597843 standard
0.929722 standard
0.924457 standard
0.840285 standard
0.837693 standard
0.538496 standard
0.539581 standard
0.668588 standard
1.00002 standard
0.668601 standard
0.239792 standard
0.429058 standard
0.518468 standard
0.606424 standard
0.610768 standard
0.514666 standard
0.429137 standard
0.240926 standard
0.311599 standard
0.31995 standard
0.328937 standard
0.659084 standard
0.384466 standard
0.377088 standard
0.367864 standard
0.402973 standard
0.406607 standard
0.413282 standard
0.421385 standard
0.363022 standard
0.352587 standard
0.34463 standard
0.341294 standard
0.61552 standard
0.620061 standard
0.897147 standard
0.893102 standard
0.8102 standard
0.809237 standard
0.559598 standard
0.559318 standard
0.664773 standard
1.0 standard
0.664665 standard
0.239881 standard
0.423342 standard
0.511502 standard
0.602845 standard
0.602844 standard
0.511499 standard
0.423338 standard
0.239876 standard
0.315553 standard
0.324064 standard
0.33271 standard
0.653433 standard
0.380708 standard
0.373185 standard
0.363894 standard
0.398983 standard
0.402425 standard
0.409348 standard
0.417492 standard
0.369527 standard
0.359735 standard
0.349208 standard
0.345994 standard
0.633439 standard
0.637185 standard
0.875174 standard
0.87185 standard
0.792197 standard
0.792206 standard
0.577231 standard
0.576175 standard
0.664798 standard
1.0 standard
0.664667 standard
0.239814 standard
0.42685 standard
0.510542 standard
0.603233 standard
0.604177 standard
0.513119 standard
0.425326 standard
0.239564 standard
0.314522 standard
0.322902 standard
0.331323 standard
0.655642 standard
0.376055 standard
0.368517 standard
0.35907 standard
0.394165 standard
0.397582 standard
0.40459 standard
0.412867 standard
0.36638 standard
0.356172 standard
0.34807 standard
0.344959 standard
0.637488 standard
0.640876 standard
0.862057 standard
0.859052 standard
0.777747 standard
0.77816 standard
0.579801 standard
0.578463 standard
0.659045 standard
1.00014 standard
0.659191 standard
0.238547 standard
0.422132 standard
0.510142 standard
0.60042 standard
0.599116 standard
0.504599 standard
0.419261 standard
0.237899 standard
0.311209 standard
0.319902 standard
0.328264 standard
0.644264 standard
0.36897 standard
0.362154 standard
0.352875 standard
0.388033 standard
0.391293 standard
0.398193 standard
0.405945 standard
0.362792 standard
0.353394 standard
0.345532 standard
0.342486 standard
0.638592 standard
0.641648 standard
0.847431 standard
0.844719 standard
0.760391 standard
0.761117 standard
0.576885 standard
0.575248 standard
0.649885 standard
1.0 standard
0.649738 standard
0.234145 standard
0.417205 standard
0.505717 standard
0.587604 standard
0.593942 standard
0.501179 standard
0.415259 standard
0.236996 standard
0.331932 standard
0.340993 standard
0.349196 standard
0.677048 standard
0.387924 standard
0.380622 standard
0.370919 standard
0.405135 standard
0.408602 standard
0.419493 standard
0.427812 standard
0.387142 standard
0.377302 standard
0.368878 standard
0.365729 standard
0.684214 standard
0.687119 standard
0.880047 standard
0.877475 standard
0.794337 standard
0.795547 standard
0.621745 standard
0.619695 standard
0.687425 standard
1.00019 standard
1.00019 standard
0.687427 standard
0.24979 standard
0.442319 standard
0.531917 standard
0.627264 standard
0.624069 standard
0.527652 standard
0.435342 standard
0.247331 standard
0.307632 standard
0.316225 standard
0.324041 standard
0.624007 standard
0.35798 standard
0.350939 standard
0.341774 standard
0.372943 standard
0.376161 standard
0.386462 standard
0.394638 standard
0.356377 standard
0.346403 standard
0.341597 standard
0.338699 standard
0.636965 standard
0.639501 standard
0.808552 standard
0.806305 standard
0.729971 standard
0.731254 standard
0.578921 standard
0.576905 standard
0.635589 standard
1.0 standard
0.635591 standard
0.228062 standard
0.400974 standard
0.489884 standard
0.577548 standard
0.588301 standard
0.487174 standard
0.40741 standard
0.230234 standard
0.315444 standard
0.32408 standard
0.331922 standard
0.649236 standard
0.364906 standard
0.357805 standard
0.348623 standard
0.38357 standard
0.386741 standard
0.390349 standard
0.399051 standard
0.364915 standard
0.354773 standard
0.350072 standard
0.347073 standard
0.655903 standard
0.658375 standard
0.822764 standard
0.820574 standard
0.742299 standard
0.743786 standard
0.595752 standard
0.593549 standard
0.649787 standard
1.0 standard
0.649789 standard
0.235428 standard
0.41614 standard
0.500651 standard
0.594722 standard
0.594722 standard
0.50065 standard
0.416139 standard
0.235427 standard
0.331522 standard
0.340629 standard
0.349329 standard
0.677174 standard
0.380451 standard
0.373147 standard
0.363142 standard
0.400535 standard
0.403795 standard
0.407216 standard
0.41627 standard
0.383719 standard
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0.365122 standard
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0.697874 standard
0.70018 standard
0.857604 standard
0.855552 standard
0.770606 standard
0.77238 standard
0.630017 standard
0.627489 standard
0.679998 standard
1.0001 standard
1.0001 standard
0.679999 standard
0.242329 standard
0.435029 standard
0.526854 standard
0.625604 standard
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0.513019 standard
0.435212 standard
0.248179 standard
0.315598 standard
0.32448 standard
0.332146 standard
0.634937 standard
0.357586 standard
0.349696 standard
0.340798 standard
0.377122 standard
0.380087 standard
0.382517 standard
0.390645 standard
0.368554 standard
0.359884 standard
0.347836 standard
0.344803 standard
0.6658 standard
0.667775 standard
0.792855 standard
0.791094 standard
0.715709 standard
0.717841 standard
0.605134 standard
0.602447 standard
0.642604 standard
1.0 standard
0.642604 standard
0.23078 standard
0.41074 standard
0.490281 standard
0.582541 standard
0.587344 standard
0.498697 standard
0.406998 standard
0.237286 standard
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