Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Pyridoxal

Simulation outputs:

InChI=1S/C8H9NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,4,10,12H,3H2,1H3 Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.01694
Temperature 298 K
pH 7.4
InChI InChI=1S/C8H9NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,4,10,12H,3H2,1H3
Note 1 qm - hydrated aldehyde

Sample description:

Compound Type Concentration
Pyridoxal Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

13 14 15 19 16 17 18
13 2.469 -14.9 -14.9 0 0 0 0
14 0 2.469 -14.9 0 0 0 0
15 0 0 2.469 0 0 0 0
19 0 0 0 6.553 0 0 0
16 0 0 0 0 7.578 0 0
17 0 0 0 0 0 5.241 -13.009
18 0 0 0 0 0 0 5.055

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

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PPM Amplitude Peak Type
1.0 standard
0.141936 standard
0.198092 standard
0.198092 standard
0.141937 standard
0.333341 standard
0.333336 standard
1.0 standard
0.0330091 standard
0.478126 standard
0.0333091 standard
0.334274 standard
0.333777 standard
1.0 standard
0.0494661 standard
0.341752 standard
0.34169 standard
0.0495671 standard
0.33382 standard
0.333596 standard
1.0 standard
0.0649871 standard
0.295701 standard
0.295708 standard
0.06502 standard
0.33344 standard
0.333315 standard
1.0 standard
0.0719193 standard
0.282735 standard
0.282743 standard
0.0719575 standard
0.333572 standard
0.333473 standard
1.0 standard
0.07824 standard
0.27247 standard
0.272476 standard
0.078262 standard
0.333524 standard
0.333444 standard
1.0 standard
0.11664 standard
0.224861 standard
0.224862 standard
0.116643 standard
0.333381 standard
0.333361 standard
1.0 standard
0.133109 standard
0.207254 standard
0.207266 standard
0.133128 standard
0.333355 standard
0.333346 standard
1.0 standard
0.141924 standard
0.197787 standard
0.197788 standard
0.141925 standard
0.333073 standard
0.333068 standard
1.0 standard
0.147309 standard
0.192528 standard
0.192529 standard
0.14731 standard
0.332898 standard
0.332895 standard
1.0 standard
0.151055 standard
0.188784 standard
0.188759 standard
0.151024 standard
0.333338 standard
0.333336 standard
1.0 standard
0.153514 standard
0.186084 standard
0.186054 standard
0.153478 standard
0.333138 standard
0.333136 standard
1.0 standard
0.154738 standard
0.184992 standard
0.184993 standard
0.154738 standard
0.333337 standard
0.333335 standard
1.0 standard
0.155607 standard
0.183992 standard
0.183992 standard
0.155608 standard
0.333216 standard
0.333214 standard
1.0 standard
0.157219 standard
0.182462 standard
0.182462 standard
0.157219 standard
0.333336 standard
0.333335 standard
1.0 standard
0.157891 standard
0.18181 standard
0.18181 standard
0.157891 standard
0.333335 standard
0.333335 standard
1.0 standard
0.158488 standard
0.181216 standard
0.181216 standard
0.158488 standard
0.333335 standard
0.333334 standard
1.0 standard
0.159516 standard
0.180186 standard
0.180138 standard
0.159462 standard
0.333335 standard
0.333334 standard
1.0 standard
0.161071 standard
0.178542 standard
0.178542 standard
0.161071 standard
0.333331 standard
0.33333 standard
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