Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Putrescine

Simulation outputs:

InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.00776
Temperature 298 K
pH 7.4
InChI InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2
pKa 10.80
pKa 9.63
Note 1 None

Sample description:

Compound Type Concentration
Putrescine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

7 8 9 10 11 12 13 14
7 1.761 -12.92 12.016 4.441 0 0 7.184 6.535
8 0 1.761 14.087 2.048 0 0 8.2 7.517
9 0 0 1.761 -12.922 7.834 7.985 0 0
10 0 0 0 1.761 3.094 8.277 0 0
11 0 0 0 0 3.045 -12.434 0 0
12 0 0 0 0 0 3.044 0 0
13 0 0 0 0 0 0 3.046 -12.431
14 0 0 0 0 0 0 0 3.044

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.0150162 standard
0.366825 standard
0.556224 standard
1.0 standard
0.553608 standard
0.368417 standard
0.014998 standard
0.392632 standard
0.901668 standard
0.384496 standard
0.551068 standard
1.0 standard
0.650198 standard
0.502965 standard
0.0301351 standard
0.0300651 standard
0.0304211 standard
0.0304231 standard
0.534541 standard
0.974439 standard
0.322166 standard
0.546187 standard
1.0 standard
0.601569 standard
0.444244 standard
0.0210851 standard
0.00654012 standard
0.018188 standard
0.0210191 standard
0.472211 standard
0.93113 standard
0.0130811 standard
0.331522 standard
0.545879 standard
1.0 standard
0.582159 standard
0.420488 standard
0.018646 standard
0.00502712 standard
0.0154191 standard
0.446961 standard
0.918089 standard
0.338412 standard
0.0136131 standard
0.334966 standard
0.546155 standard
1.0 standard
0.576574 standard
0.413129 standard
0.0176531 standard
0.00474212 standard
0.0148361 standard
0.439632 standard
0.914094 standard
0.343753 standard
0.0137481 standard
0.338411 standard
0.547369 standard
1.0 standard
0.572296 standard
0.407696 standard
0.017496 standard
0.00456012 standard
0.0136461 standard
0.434134 standard
0.911727 standard
0.34697 standard
0.0143422 standard
0.358986 standard
0.554309 standard
1.0 standard
0.55579 standard
0.378524 standard
0.0159082 standard
0.406808 standard
0.905807 standard
0.372475 standard
0.014622 standard
0.365483 standard
0.557252 standard
1.00004 standard
0.55216 standard
0.37108 standard
0.0154511 standard
0.396569 standard
0.90475 standard
0.382722 standard
0.014929 standard
0.366489 standard
0.556426 standard
1.0002 standard
0.551674 standard
0.369068 standard
0.0150816 standard
0.393339 standard
0.903048 standard
0.384548 standard
0.0150271 standard
0.366301 standard
0.555835 standard
1.0 standard
0.553079 standard
0.368769 standard
0.015005 standard
0.392527 standard
0.901526 standard
0.38434 standard
0.0150117 standard
0.367382 standard
0.555186 standard
1.00009 standard
0.551852 standard
0.367616 standard
0.0150051 standard
0.393255 standard
0.900262 standard
0.383522 standard
0.0150341 standard
0.36717 standard
0.554096 standard
1.0005 standard
0.55294 standard
0.36773 standard
0.0149992 standard
0.39165 standard
0.89795 standard
0.384371 standard
0.0149875 standard
0.367729 standard
0.553817 standard
1.00054 standard
0.551663 standard
0.36913 standard
0.0150496 standard
0.393305 standard
0.898947 standard
0.382783 standard
0.0150422 standard
0.367508 standard
0.555647 standard
1.00056 standard
0.552618 standard
0.368192 standard
0.0150434 standard
0.391624 standard
0.895687 standard
0.383533 standard
0.0150001 standard
0.368463 standard
0.556184 standard
1.00046 standard
0.552711 standard
0.369136 standard
0.015025 standard
0.39104 standard
0.894877 standard
0.381599 standard
0.015017 standard
0.36682 standard
0.553064 standard
1.0004 standard
0.552123 standard
0.368473 standard
0.0149723 standard
0.391867 standard
0.894605 standard
0.382148 standard
0.0149954 standard
0.367553 standard
0.554808 standard
1.00044 standard
0.553278 standard
0.369501 standard
0.0150271 standard
0.390474 standard
0.892957 standard
0.381409 standard
0.015034 standard
0.367419 standard
0.554444 standard
1.00038 standard
0.55158 standard
0.370315 standard
0.0150737 standard
0.390758 standard
0.889546 standard
0.377352 standard
0.0150002 standard
0.369569 standard
0.553378 standard
1.00036 standard
0.553103 standard
0.367777 standard
0.0150189 standard
0.392192 standard
0.883498 standard
0.380835 standard
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