Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Nicotine

Simulation outputs:

InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/t10-/m0/s1 Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.01151
Temperature 298 K
pH 7.4
InChI InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/t10-/m0/s1
Note 1 19?22

Sample description:

Compound Type Concentration
Nicotine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

13 14 15 23 24 17 18 20 21 26 25 22 16 19
13 2.744 -12.5 -12.5 0 0 0 0 0 0 0 0 0 0 0
14 0 2.744 -12.5 0 0 0 0 0 0 0 0 0 0 0
15 0 0 2.744 0 0 0 0 0 0 0 0 0 0 0
23 0 0 0 2.28 -10.132 7.828 4.243 0 0 0 0 0 0 0
24 0 0 0 0 2.319 6.254 7.022 0 0 0 0 0 0 0
17 0 0 0 0 0 2.376 -12.855 5.897 0.064 0 0 0 0 0
18 0 0 0 0 0 0 2.593 0.623 7.985 0 0 0 0 0
20 0 0 0 0 0 0 0 3.803 -11.595 7.608 0 0 0 0
21 0 0 0 0 0 0 0 0 3.311 9.402 0 0 0 0
26 0 0 0 0 0 0 0 0 0 4.418 0 0 0 0
25 0 0 0 0 0 0 0 0 0 0 8.662 0 0 0
22 0 0 0 0 0 0 0 0 0 0 0 8.634 4.886 0
16 0 0 0 0 0 0 0 0 0 0 0 0 7.597 7.713
19 0 0 0 0 0 0 0 0 0 0 0 0 0 8.048

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.013417 standard
0.0472372 standard
0.055124 standard
0.0835983 standard
0.0882906 standard
0.0598724 standard
0.048931 standard
0.0413918 standard
0.0447373 standard
0.0319127 standard
0.0139301 standard
0.0310771 standard
0.043149 standard
0.0363582 standard
0.027351 standard
0.013676 standard
1.0 standard
0.0225256 standard
0.045127 standard
0.0475517 standard
0.0245148 standard
0.0248953 standard
0.0413767 standard
0.0447492 standard
0.0384281 standard
0.0240536 standard
0.0460848 standard
0.0707658 standard
0.0428564 standard
0.0458968 standard
0.0622156 standard
0.0492192 standard
0.0818258 standard
0.0761114 standard
0.090619 standard
0.0956561 standard
0.152711 standard
0.310164 standard
1.0 standard
0.0466131 standard
0.0437921 standard
0.0557401 standard
0.0690601 standard
0.0595531 standard
0.0296111 standard
0.071237 standard
0.0600021 standard
0.0271281 standard
0.0322781 standard
0.0671221 standard
0.0738991 standard
0.108174 standard
0.0566391 standard
0.215058 standard
0.221281 standard
0.0675471 standard
1.0 standard
0.0200181 standard
0.0427331 standard
0.0444271 standard
0.0363541 standard
0.0355461 standard
0.0492271 standard
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0.0271651 standard
0.0602561 standard
0.0656691 standard
0.0333771 standard
0.0361771 standard
0.0649551 standard
0.0631791 standard
0.0986073 standard
0.061606 standard
0.222604 standard
0.200764 standard
0.134904 standard
0.0903441 standard
0.0568001 standard
1.0 standard
0.0193131 standard
0.0430411 standard
0.0444781 standard
0.0309601 standard
0.0300801 standard
0.0447351 standard
0.0484021 standard
0.0283511 standard
0.0233501 standard
0.0555941 standard
0.0676511 standard
0.0357491 standard
0.038462 standard
0.0639941 standard
0.058587 standard
0.0932893 standard
0.065543 standard
0.226882 standard
0.200523 standard
0.112258 standard
0.077741 standard
0.0533481 standard
1.0 standard
0.0196621 standard
0.0429581 standard
0.0449961 standard
0.029882 standard
0.0289071 standard
0.0434751 standard
0.048006 standard
0.0234891 standard
0.05418 standard
0.0683471 standard
0.0366741 standard
0.0393201 standard
0.0636851 standard
0.05717 standard
0.0915814 standard
0.066794 standard
0.227027 standard
0.199322 standard
0.094288 standard
0.0649081 standard
0.0516901 standard
0.0450311 standard
1.0 standard
0.0199501 standard
0.0432291 standard
0.0456811 standard
0.029147 standard
0.0280221 standard
0.0426361 standard
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0.0688601 standard
0.0374711 standard
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0.056154 standard
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0.06792 standard
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0.226034 standard
0.074104 standard
0.15573 standard
0.0640793 standard
0.0527131 standard
0.0351 standard
0.0172071 standard
0.0104251 standard
0.0239511 standard
0.036747 standard
0.048092 standard
0.0371501 standard
0.0167841 standard
1.0 standard
0.0216412 standard
0.0438791 standard
0.0479852 standard
0.0260331 standard
0.0257133 standard
0.0406272 standard
0.046505 standard
0.0346011 standard
0.024094 standard
0.0484384 standard
0.0705004 standard
0.0410371 standard
0.043696 standard
0.0628111 standard
0.0517906 standard
0.0848082 standard
0.0734018 standard
0.09963 standard
0.17805 standard
0.0886921 standard
0.117686 standard
0.0845223 standard
0.060502 standard
0.0444315 standard
0.0463161 standard
0.0324284 standard
0.014464 standard
0.00263213 standard
0.035366 standard
0.0453251 standard
0.0363045 standard
1.0 standard
0.0220454 standard
0.044796 standard
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0.0249732 standard
0.0250825 standard
0.041463 standard
0.045099 standard
0.03724 standard
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0.0882913 standard
0.0598863 standard
0.048896 standard
0.0413978 standard
0.0447274 standard
0.0319336 standard
0.0139391 standard
0.0310671 standard
0.043153 standard
0.0363642 standard
0.027355 standard
0.013658 standard
1.0 standard
0.0225303 standard
0.0450811 standard
0.0475705 standard
0.0244977 standard
0.0248631 standard
0.0413596 standard
0.0447212 standard
0.038432 standard
0.0240608 standard
0.0460877 standard
0.0707748 standard
0.0428594 standard
0.0459031 standard
0.0622268 standard
0.0492263 standard
0.0818308 standard
0.0761136 standard
0.090629 standard
0.0956691 standard
0.152715 standard
0.0149202 standard
0.0474331 standard
0.0511144 standard
0.0584951 standard
0.0754461 standard
0.0699733 standard
0.0533804 standard
0.042266 standard
0.0340031 standard
0.0415818 standard
0.0441755 standard
0.0317761 standard
0.0137171 standard
0.0181864 standard
0.0326512 standard
0.0419127 standard
0.0376806 standard
0.0273301 standard
0.0134493 standard
1.0 standard
0.0228174 standard
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0.044383 standard
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0.0476033 standard
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0.06417 standard
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0.0329798 standard
0.041765 standard
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0.0317553 standard
0.01368 standard
0.0174108 standard
0.0322933 standard
0.0411131 standard
0.037846 standard
0.0273786 standard
0.013475 standard
1.0 standard
0.022541 standard
0.0456372 standard
0.0475868 standard
0.0241343 standard
0.0254781 standard
0.042436 standard
0.044004 standard
0.040256 standard
0.0244691 standard
0.0452675 standard
0.0711155 standard
0.044083 standard
0.0462839 standard
0.0623921 standard
0.0486857 standard
0.0807879 standard
0.0769724 standard
0.088279 standard
0.0897901 standard
0.148804 standard
0.0177557 standard
0.0478075 standard
0.0482904 standard
0.0475614 standard
0.0432302 standard
0.0347788 standard
0.0614632 standard
0.0486571 standard
0.0246861 standard
0.019699 standard
0.0326023 standard
0.0421347 standard
0.0438326 standard
0.0317617 standard
0.0136329 standard
0.0169775 standard
0.0321471 standard
0.0406632 standard
0.0379264 standard
0.0277905 standard
0.0136784 standard
1.0 standard
0.0226275 standard
0.04582 standard
0.0473444 standard
0.0240038 standard
0.025514 standard
0.0425503 standard
0.0438387 standard
0.040504 standard
0.0241472 standard
0.044506 standard
0.0717525 standard
0.044506 standard
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0.0611289 standard
0.0619901 standard
0.0485572 standard
0.080548 standard
0.0772792 standard
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0.148012 standard
0.018541 standard
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0.046322 standard
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0.033171 standard
0.060402 standard
0.0480286 standard
0.040046 standard
0.0242872 standard
0.018835 standard
0.0323291 standard
0.0421563 standard
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0.0317221 standard
0.0136314 standard
0.0168112 standard
0.0319841 standard
0.0404217 standard
0.0382399 standard
0.028031 standard
0.0138822 standard
1.0 standard
0.0226254 standard
0.046052 standard
0.0471773 standard
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0.0405926 standard
0.0241373 standard
0.0444772 standard
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0.06213 standard
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0.018197 standard
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0.0282171 standard
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1.0 standard
0.0226997 standard
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0.040672 standard
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0.0444129 standard
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0.0484825 standard
0.0803514 standard
0.0774916 standard
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0.0885376 standard
0.147506 standard
0.019836 standard
0.048245 standard
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0.0438608 standard
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0.030677 standard
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0.0173964 standard
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0.0165101 standard
0.0314971 standard
0.0405342 standard
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0.0283762 standard
0.0141493 standard
1.0 standard
0.0227234 standard
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0.0472444 standard
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0.0253354 standard
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0.0435604 standard
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0.0241901 standard
0.044463 standard
0.071104 standard
0.044463 standard
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0.147165 standard
0.0202405 standard
0.04875 standard
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0.0372303 standard
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0.0136844 standard
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0.040522 standard
0.0383502 standard
0.0285135 standard
0.0142104 standard
1.0 standard
0.0227287 standard
0.045814 standard
0.0468596 standard
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0.0252207 standard
0.0424296 standard
0.0433691 standard
0.0409442 standard
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0.0444473 standard
0.0474688 standard
0.0616151 standard
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0.087483 standard
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0.0203418 standard
0.0486511 standard
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0.04223 standard
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1.0 standard
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0.0137389 standard
0.016246 standard
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1.0 standard
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0.0614955 standard
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0.0145129 standard
1.0 standard
0.0232676 standard
0.0466176 standard
0.0466179 standard
0.0232676 standard
0.024785 standard
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0.0438903 standard
0.0414013 standard
0.024785 standard
0.0444409 standard
0.070866 standard
0.0444406 standard
0.0474542 standard
0.0615166 standard
0.0615166 standard
0.0474542 standard
0.0788493 standard
0.0788484 standard
0.0868738 standard
0.0870198 standard
0.146498 standard
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