Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

D-carnitine

Simulation outputs:

InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01387
Temperature 298 K
pH 7.4
InChI InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1
pKa 3.80
Note 1 21,22?23,24

Sample description:

Compound Type Concentration
D-Carnitine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

12 13 14 15 16 17 18 19 20 21 22 25 23 24
12 3.216 -12.5 -12.5 0 0 0 0 0 0 0 0 0 0 0
13 0 3.216 -12.5 0 0 0 0 0 0 0 0 0 0 0
14 0 0 3.216 0 0 0 0 0 0 0 0 0 0 0
15 0 0 0 3.216 -12.5 -12.5 0 0 0 0 0 0 0 0
16 0 0 0 0 3.216 -12.5 0 0 0 0 0 0 0 0
17 0 0 0 0 0 3.216 0 0 0 0 0 0 0 0
18 0 0 0 0 0 0 3.216 -12.5 -12.5 0 0 0 0 0
19 0 0 0 0 0 0 0 3.216 -12.5 0 0 0 0 0
20 0 0 0 0 0 0 0 0 3.216 0 0 0 0 0
21 0 0 0 0 0 0 0 0 0 3.427 -13.514 7.982 0 0
22 0 0 0 0 0 0 0 0 0 0 3.414 2.445 0 0
25 0 0 0 0 0 0 0 0 0 0 0 4.557 6.781 7.828
23 0 0 0 0 0 0 0 0 0 0 0 0 2.407 -15.546
24 0 0 0 0 0 0 0 0 0 0 0 0 0 2.441

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.0116893 standard
0.0139569 standard
0.0601939 standard
0.112726 standard
0.0587366 standard
0.0134091 standard
0.0123374 standard
1.0 standard
0.00990147 standard
0.134562 standard
0.0872073 standard
0.0779311 standard
0.00765324 standard
0.0109622 standard
0.0273252 standard
0.0304238 standard
0.0303874 standard
0.0274271 standard
0.0109513 standard
0.12368 standard
0.147597 standard
1.0 standard
0.208426 standard
0.173176 standard
0.00523212 standard
0.0175211 standard
0.0310841 standard
0.0382571 standard
0.0220511 standard
0.0210361 standard
0.00865313 standard
0.12743 standard
0.142794 standard
1.0 standard
0.156327 standard
0.156953 standard
0.00729213 standard
0.00253813 standard
0.0145961 standard
0.0277081 standard
0.0293091 standard
0.039464 standard
0.0233101 standard
0.0220191 standard
0.00919213 standard
0.128378 standard
0.139386 standard
0.00382313 standard
1.0 standard
0.14536 standard
0.148494 standard
0.00639412 standard
0.00189813 standard
0.0134551 standard
0.0266801 standard
0.028319 standard
0.039716 standard
0.0242061 standard
0.0226211 standard
0.00957012 standard
0.128375 standard
0.137632 standard
0.00353812 standard
1.0 standard
0.143228 standard
0.145429 standard
0.00612213 standard
0.00174413 standard
0.0131201 standard
0.0263621 standard
0.0280722 standard
0.0396071 standard
0.0246381 standard
0.0228561 standard
0.00973 standard
0.128164 standard
0.135764 standard
0.00344212 standard
1.0 standard
0.141934 standard
0.14302 standard
0.00592212 standard
0.00165613 standard
0.0126931 standard
0.0259501 standard
0.027861 standard
0.0395534 standard
0.0248303 standard
0.0229911 standard
0.00985113 standard
0.003967 standard
0.00734013 standard
0.108833 standard
0.099481 standard
0.00683012 standard
0.00474637 standard
1.0 standard
0.0100241 standard
0.13901 standard
0.12488 standard
0.00531225 standard
0.011335 standard
0.02669 standard
0.0368322 standard
0.0259861 standard
0.010722 standard
0.00643603 standard
0.00940362 standard
0.0765966 standard
0.0806108 standard
0.0769611 standard
0.0721481 standard
0.00874263 standard
0.007246 standard
1.0 standard
0.00878904 standard
0.138765 standard
0.106912 standard
0.00587037 standard
0.0111754 standard
0.026786 standard
0.033854 standard
0.026259 standard
0.0107778 standard
0.00914747 standard
0.0117457 standard
0.0656122 standard
0.0819977 standard
0.080972 standard
0.063452 standard
0.0111352 standard
0.00990275 standard
1.0 standard
0.00913145 standard
0.138677 standard
0.0935279 standard
0.087867 standard
0.00658316 standard
0.010957 standard
0.0269572 standard
0.0310766 standard
0.0310833 standard
0.0269742 standard
0.01098 standard
0.0116926 standard
0.0139608 standard
0.0602009 standard
0.112573 standard
0.0587196 standard
0.0134101 standard
0.0123396 standard
1.0 standard
0.00990547 standard
0.13472 standard
0.0872326 standard
0.0775502 standard
0.00765124 standard
0.0109622 standard
0.0273202 standard
0.0304167 standard
0.0303815 standard
0.0274221 standard
0.0109502 standard
0.0139833 standard
0.0159957 standard
0.0567481 standard
0.0659265 standard
0.0662293 standard
0.0556047 standard
0.0155199 standard
0.0145144 standard
1.0 standard
0.005108 standard
0.0108308 standard
0.126137 standard
0.08559 standard
0.0714605 standard
0.00874652 standard
0.0110021 standard
0.0279955 standard
0.030366 standard
0.0304088 standard
0.0279619 standard
0.011 standard
0.0159672 standard
0.0177634 standard
0.0542283 standard
0.0560425 standard
0.0562474 standard
0.0532585 standard
0.0173661 standard
0.0163842 standard
1.0 standard
0.00614605 standard
0.0118409 standard
0.113965 standard
0.0894875 standard
0.0672834 standard
0.00810708 standard
0.00985281 standard
0.0110164 standard
0.0148081 standard
0.0280887 standard
0.0305717 standard
0.0303056 standard
0.028392 standard
0.0147003 standard
0.0110616 standard
0.0168872 standard
0.018594 standard
0.053286 standard
0.054092 standard
0.0542253 standard
0.0523662 standard
0.0182386 standard
0.0172473 standard
1.0 standard
0.00683647 standard
0.0123796 standard
0.109107 standard
0.0658166 standard
0.008552 standard
0.0104238 standard
0.0110185 standard
0.0143591 standard
0.028687 standard
0.0306214 standard
0.0304757 standard
0.0285718 standard
0.0144321 standard
0.0110285 standard
0.0177072 standard
0.0193308 standard
0.0523407 standard
0.0526206 standard
0.052687 standard
0.051465 standard
0.0190142 standard
0.0180112 standard
1.0 standard
0.007415 standard
0.0129169 standard
0.109138 standard
0.064216 standard
0.00907105 standard
0.0109678 standard
0.0110695 standard
0.0142664 standard
0.0286069 standard
0.0307231 standard
0.0306258 standard
0.0286612 standard
0.014213 standard
0.0111295 standard
0.0191702 standard
0.0206595 standard
0.0507063 standard
0.050477 standard
0.0504536 standard
0.0499287 standard
0.0203925 standard
0.0193863 standard
1.0 standard
0.00868809 standard
0.0139583 standard
0.0848437 standard
0.120255 standard
0.0617343 standard
0.010141 standard
0.0120153 standard
0.0111053 standard
0.0140045 standard
0.0291168 standard
0.0305668 standard
0.0305679 standard
0.0291168 standard
0.0140045 standard
0.011105 standard
0.0197932 standard
0.0212524 standard
0.0499429 standard
0.0495861 standard
0.0495648 standard
0.0492406 standard
0.0210103 standard
0.0199882 standard
1.0 standard
0.00949325 standard
0.0145181 standard
0.0803818 standard
0.124125 standard
0.0607272 standard
0.0106513 standard
0.0125263 standard
0.0112464 standard
0.0138482 standard
0.0291189 standard
0.0307282 standard
0.0307292 standard
0.0291189 standard
0.0138482 standard
0.0112464 standard
0.0203992 standard
0.0217933 standard
0.0492969 standard
0.0488634 standard
0.048829 standard
0.0486545 standard
0.021578 standard
0.0205532 standard
1.0 standard
0.01014 standard
0.0150337 standard
0.077052 standard
0.123544 standard
0.0598365 standard
0.0111973 standard
0.012997 standard
0.0111703 standard
0.0138251 standard
0.0290517 standard
0.0309526 standard
0.0309526 standard
0.0290517 standard
0.0138251 standard
0.0111703 standard
0.0214662 standard
0.0227822 standard
0.0481749 standard
0.0476489 standard
0.0474851 standard
0.0475174 standard
0.0226026 standard
0.0215892 standard
1.0 standard
0.0115231 standard
0.0160977 standard
0.0739822 standard
0.108018 standard
0.0581156 standard
0.0123091 standard
0.0139519 standard
0.0113411 standard
0.0136836 standard
0.0293338 standard
0.0307853 standard
0.0307853 standard
0.0293329 standard
0.0136836 standard
0.0113411 standard
0.0232303 standard
0.0244361 standard
0.0462944 standard
0.045685 standard
0.0455374 standard
0.0458083 standard
0.0242602 standard
0.0232262 standard
1.0 standard
0.0140155 standard
0.0180449 standard
0.0681986 standard
0.0720793 standard
0.0699547 standard
0.0554317 standard
0.0143892 standard
0.0156738 standard
0.0113731 standard
0.0135224 standard
0.02962 standard
0.0312352 standard
0.0308403 standard
0.0296963 standard
0.0135594 standard
0.011521 standard
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