Guided Ideographic Spin System Model Optimization

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Mixture Simulation

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Simulation: simulation_1

BMRB entry

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Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Cadaverine

Simulation outputs:

InChI=1S/C5H14N2/c6-4-2-1-3-5-7/h1-7H2 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01443
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H14N2/c6-4-2-1-3-5-7/h1-7H2
pKa 10.05
pKa 10.93
Note 1 None

Sample description:

Compound Type Concentration
Cadaverine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

8 9 10 11 14 15 12 13 16 17
8 1.46 -12.4 5.909 10.257 0 0 7.9 7.9 0 0
9 0 1.46 10.37 4.348 0 0 7.9 7.9 0 0
10 0 0 1.71 -12.4 7.6 7.6 0 0 0 0
11 0 0 0 1.71 7.6 7.6 0 0 0 0
14 0 0 0 0 3.012 -12.4 0 0 0 0
15 0 0 0 0 0 3.012 0 0 0 0
12 0 0 0 0 0 0 1.71 -12.4 7.6 7.6
13 0 0 0 0 0 0 0 1.71 7.6 7.6
16 0 0 0 0 0 0 0 0 3.012 -12.4
17 0 0 0 0 0 0 0 0 0 3.012

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
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PPM Amplitude Peak Type
0.051047 standard
0.164604 standard
0.254056 standard
0.217868 standard
0.0807805 standard
0.155129 standard
0.471269 standard
0.630464 standard
0.417186 standard
0.123478 standard
0.515452 standard
1.00001 standard
0.514561 standard
1.0 standard
0.321537 standard
0.0914931 standard
0.0918381 standard
0.5234 standard
0.925392 standard
0.0145231 standard
0.100273 standard
0.84754 standard
0.746903 standard
0.567322 standard
0.330766 standard
0.105345 standard
0.572991 standard
1.0 standard
0.358154 standard
0.0168221 standard
0.101132 standard
0.101 standard
0.151958 standard
0.194562 standard
0.554194 standard
0.552426 standard
0.536409 standard
0.318265 standard
0.104924 standard
0.577047 standard
1.0 standard
0.387109 standard
0.0181641 standard
0.0337351 standard
0.105314 standard
0.158456 standard
0.187593 standard
0.322934 standard
0.469451 standard
0.510015 standard
0.522718 standard
0.32113 standard
0.10119 standard
0.580827 standard
1.0 standard
0.403453 standard
0.0194003 standard
0.0335331 standard
0.107911 standard
0.168716 standard
0.184527 standard
0.275589 standard
0.377627 standard
0.476739 standard
0.522893 standard
0.328002 standard
0.100452 standard
0.582804 standard
1.0 standard
0.41973 standard
0.0294283 standard
0.0348923 standard
0.116632 standard
0.215771 standard
0.125886 standard
0.211804 standard
0.101928 standard
0.0137301 standard
0.181188 standard
0.476297 standard
0.574093 standard
0.349545 standard
0.106574 standard
0.536747 standard
1.00002 standard
0.494324 standard
0.0404891 standard
0.139638 standard
0.239007 standard
0.216696 standard
0.0855433 standard
0.00384612 standard
0.166506 standard
0.475073 standard
0.604951 standard
0.382818 standard
0.113935 standard
0.519116 standard
1.00013 standard
0.511524 standard
0.0463728 standard
0.154709 standard
0.249016 standard
0.218182 standard
0.0824204 standard
0.159208 standard
0.473596 standard
0.622183 standard
0.404214 standard
0.119671 standard
0.517067 standard
1.00016 standard
0.513518 standard
0.051039 standard
0.164647 standard
0.254073 standard
0.217784 standard
0.0806889 standard
0.155064 standard
0.471044 standard
0.63045 standard
0.416875 standard
0.123171 standard
0.515447 standard
1.00001 standard
0.514441 standard
0.0542524 standard
0.171656 standard
0.258121 standard
0.215665 standard
0.079834 standard
0.151846 standard
0.468196 standard
0.632702 standard
0.425603 standard
0.126125 standard
0.515377 standard
1.00011 standard
0.514632 standard
0.0567546 standard
0.177407 standard
0.260437 standard
0.213846 standard
0.0782416 standard
0.149653 standard
0.465119 standard
0.634466 standard
0.431641 standard
0.127803 standard
0.514739 standard
1.00063 standard
0.513869 standard
0.0582777 standard
0.180626 standard
0.261399 standard
0.212861 standard
0.0777532 standard
0.148917 standard
0.464233 standard
0.636989 standard
0.435368 standard
0.128992 standard
0.515093 standard
1.00076 standard
0.514241 standard
0.0595381 standard
0.183519 standard
0.261893 standard
0.212343 standard
0.07739 standard
0.14836 standard
0.462295 standard
0.636101 standard
0.437679 standard
0.130288 standard
0.515536 standard
1.00091 standard
0.514189 standard
0.0608504 standard
0.187488 standard
0.263036 standard
0.209048 standard
0.0763328 standard
0.146849 standard
0.46004 standard
0.638345 standard
0.442275 standard
0.131301 standard
0.514937 standard
1.00118 standard
0.514566 standard
0.0618857 standard
0.188643 standard
0.263425 standard
0.209317 standard
0.0756485 standard
0.145986 standard
0.459108 standard
0.638911 standard
0.443742 standard
0.132089 standard
0.515912 standard
1.00132 standard
0.51563 standard
0.0625603 standard
0.190233 standard
0.264537 standard
0.208311 standard
0.0751645 standard
0.145369 standard
0.458015 standard
0.638644 standard
0.445755 standard
0.13237 standard
0.5159 standard
1.00159 standard
0.515427 standard
0.0644434 standard
0.193114 standard
0.265457 standard
0.205595 standard
0.0744588 standard
0.144055 standard
0.457301 standard
0.638174 standard
0.4485 standard
0.133896 standard
0.516071 standard
1.00116 standard
0.515701 standard
0.0655159 standard
0.196537 standard
0.265265 standard
0.204271 standard
0.0719765 standard
0.14164 standard
0.453976 standard
0.641608 standard
0.450308 standard
0.134981 standard
0.514706 standard
1.00161 standard
0.515928 standard
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