Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

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pKa (R. Williams)

1H NMR (Hans J. Reich)

Betaine-aldehyde

Simulation outputs:

InChI=1S/C5H12NO/c1-6(2,3)4-5-7/h5H,4H2,1-3H3/q+1 Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.14416
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H12NO/c1-6(2,3)4-5-7/h5H,4H2,1-3H3/q+1
Note 1 missing peaks 17,18
Note 2 aldehyde hydrated

Sample description:

Compound Type Concentration
Betaine aldehyde Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

8 9 10 11 12 13 14 15 16 17 18 19
8 3.225 -12.5 -12.5 0 0 0 0 0 0 0 0 0
9 0 3.225 -12.5 0 0 0 0 0 0 0 0 0
10 0 0 3.225 0 0 0 0 0 0 0 0 0
11 0 0 0 3.225 -12.5 -12.5 0 0 0 0 0 0
12 0 0 0 0 3.225 -12.5 0 0 0 0 0 0
13 0 0 0 0 0 3.225 0 0 0 0 0 0
14 0 0 0 0 0 0 3.225 -12.5 -12.5 0 0 0
15 0 0 0 0 0 0 0 3.225 -12.5 0 0 0
16 0 0 0 0 0 0 0 0 3.225 0 0 0
17 0 0 0 0 0 0 0 0 0 4.3 -12.4 0
18 0 0 0 0 0 0 0 0 0 0 4.3 0
19 0 0 0 0 0 0 0 0 0 0 0 5.559

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
1.0 standard
0.22223 standard
0.111114 standard
1.0 standard
0.22278 standard
0.111285 standard
1.0 standard
0.222477 standard
0.111191 standard
1.0 standard
0.222369 standard
0.111158 standard
1.0 standard
0.222339 standard
0.111149 standard
1.0 standard
0.222318 standard
0.111142 standard
1.0 standard
0.222249 standard
0.11112 standard
1.0 standard
0.222235 standard
0.111116 standard
1.0 standard
0.22223 standard
0.111114 standard
1.0 standard
0.222228 standard
0.111113 standard
1.0 standard
0.222226 standard
0.111113 standard
1.0 standard
0.222226 standard
0.111112 standard
1.0 standard
0.222225 standard
0.111112 standard
1.0 standard
0.222225 standard
0.111112 standard
1.0 standard
0.222225 standard
0.111112 standard
1.0 standard
0.222224 standard
0.111112 standard
1.0 standard
0.222224 standard
0.111112 standard
1.0 standard
0.222224 standard
0.111112 standard
1.0 standard
0.222224 standard
0.111112 standard
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