Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

Agmatine

Simulation outputs:

InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9) Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01030
Temperature 298 K
pH 7.4
InChI InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9)
pKa 12.61StrongestBasic(HMDB01432)
Note 1 None

Sample description:

Compound Type Concentration
agmatine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 16 17 14 15
10 1.732 -14.168 11.38 5.131 0 0 8.61 9.617
11 0 1.734 2.539 12.227 0 0 2.66 9.592
12 0 0 1.67 -18.273 7.645 2.274 0 0
13 0 0 0 1.672 10.614 7.14 0 0
16 0 0 0 0 3.23 -12.424 0 0
17 0 0 0 0 0 3.23 0 0
14 0 0 0 0 0 0 3.022 -13.254
15 0 0 0 0 0 0 0 3.022

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.0600951 standard
0.0776751 standard
0.200594 standard
0.184236 standard
0.250406 standard
0.351752 standard
0.235203 standard
0.333933 standard
0.210314 standard
0.170917 standard
0.204455 standard
0.195361 standard
0.287483 standard
0.281416 standard
0.211907 standard
0.330889 standard
0.142401 standard
0.200497 standard
0.186051 standard
0.0817574 standard
0.0641966 standard
0.599036 standard
0.742991 standard
0.155475 standard
0.426627 standard
0.00539207 standard
0.0101926 standard
0.429795 standard
1.00012 standard
0.529583 standard
0.0127895 standard
0.0106081 standard
0.0137421 standard
0.0403191 standard
0.0441251 standard
0.0468941 standard
0.618842 standard
1.0 standard
0.681922 standard
0.759208 standard
0.509684 standard
0.100435 standard
0.102385 standard
0.072956 standard
0.036094 standard
0.0103751 standard
0.0100831 standard
0.00892712 standard
0.00996413 standard
0.0229631 standard
0.0189031 standard
0.0629841 standard
0.308845 standard
0.270885 standard
0.35523 standard
0.630126 standard
0.534526 standard
0.55141 standard
0.732984 standard
0.290468 standard
0.262916 standard
0.119713 standard
0.0126051 standard
0.0144161 standard
0.0396172 standard
0.0381291 standard
0.0510041 standard
0.308273 standard
0.676725 standard
1.0 standard
0.758091 standard
0.400762 standard
0.090093 standard
0.0530083 standard
0.0681386 standard
0.0268471 standard
0.00577213 standard
0.0157991 standard
0.0138231 standard
0.0423071 standard
0.287547 standard
0.259748 standard
0.314321 standard
0.519234 standard
0.44175 standard
0.436974 standard
0.682668 standard
0.262953 standard
0.27848 standard
0.138848 standard
0.021382 standard
0.0167051 standard
0.0174912 standard
0.0519364 standard
0.0452551 standard
0.0577152 standard
0.349464 standard
0.810473 standard
1.0 standard
0.888619 standard
0.398248 standard
0.0601415 standard
0.074115 standard
0.027655 standard
0.00515813 standard
0.0156621 standard
0.0434971 standard
0.305638 standard
0.330994 standard
0.556763 standard
0.319824 standard
0.268389 standard
0.262574 standard
0.339846 standard
0.349186 standard
0.408473 standard
0.726207 standard
0.312197 standard
0.00841013 standard
0.00687512 standard
0.0187302 standard
0.019183 standard
0.0582132 standard
0.0488711 standard
0.058305 standard
0.366354 standard
0.868644 standard
1.0 standard
0.93498 standard
0.404776 standard
0.245908 standard
0.0746374 standard
0.063854 standard
0.0768821 standard
0.0290611 standard
0.0154063 standard
0.0154691 standard
0.0430542 standard
0.317533 standard
0.336456 standard
0.577231 standard
0.314743 standard
0.271915 standard
0.229727 standard
0.320493 standard
0.41295 standard
0.750757 standard
0.326621 standard
0.00827413 standard
0.00718913 standard
0.0207821 standard
0.0211273 standard
0.0652565 standard
0.0545101 standard
0.060188 standard
0.372315 standard
0.923302 standard
0.978706 standard
1.0 standard
0.971761 standard
0.411478 standard
0.240819 standard
0.0743886 standard
0.0682272 standard
0.0805761 standard
0.0306955 standard
0.015502 standard
0.0135361 standard
0.044291 standard
0.057513 standard
0.33249 standard
0.337126 standard
0.595534 standard
0.321928 standard
0.282873 standard
0.0817713 standard
0.315409 standard
0.287671 standard
0.425254 standard
0.775132 standard
0.343602 standard
0.00842513 standard
0.00775713 standard
0.038579 standard
0.0846615 standard
0.106493 standard
0.197414 standard
0.196371 standard
0.254192 standard
0.564858 standard
0.791952 standard
1.00002 standard
0.76391 standard
0.781282 standard
0.41325 standard
0.380304 standard
0.211683 standard
0.215744 standard
0.10994 standard
0.0789783 standard
0.0961887 standard
0.0466843 standard
0.00823903 standard
0.009493 standard
0.015106 standard
0.480202 standard
0.288475 standard
0.760508 standard
0.40546 standard
0.01296 standard
0.014811 standard
0.0187693 standard
0.0128351 standard
0.0291423 standard
0.413571 standard
0.326375 standard
0.956125 standard
0.511784 standard
0.007568 standard
0.006399 standard
0.0472021 standard
0.0819091 standard
0.146163 standard
0.202301 standard
0.201572 standard
0.378777 standard
0.719271 standard
0.571174 standard
0.55474 standard
0.530375 standard
0.283383 standard
0.352569 standard
0.28165 standard
0.186428 standard
0.209234 standard
0.126857 standard
0.0868098 standard
0.0539088 standard
0.00523637 standard
0.0112372 standard
0.563877 standard
0.742308 standard
0.436553 standard
0.00909563 standard
0.00831287 standard
0.010222 standard
0.00877202 standard
0.462903 standard
1.00008 standard
0.559658 standard
0.006372 standard
0.0531901 standard
0.077459 standard
0.174795 standard
0.192155 standard
0.208974 standard
0.340196 standard
0.413208 standard
0.435317 standard
0.355188 standard
0.297837 standard
0.230723 standard
0.2889 standard
0.299973 standard
0.164317 standard
0.201285 standard
0.158214 standard
0.0813253 standard
0.058619 standard
0.592683 standard
0.748045 standard
0.436041 standard
0.00592004 standard
0.00882908 standard
0.439993 standard
1.00007 standard
0.545505 standard
0.0111066 standard
0.0600343 standard
0.0777811 standard
0.200627 standard
0.184232 standard
0.25053 standard
0.351942 standard
0.235107 standard
0.333992 standard
0.211526 standard
0.170161 standard
0.203615 standard
0.19669 standard
0.287636 standard
0.281629 standard
0.212248 standard
0.331465 standard
0.142391 standard
0.200699 standard
0.185938 standard
0.0819355 standard
0.064388 standard
0.598244 standard
0.74216 standard
0.155428 standard
0.426629 standard
0.00539103 standard
0.0102571 standard
0.429886 standard
1.00012 standard
0.528676 standard
0.0127885 standard
0.00811825 standard
0.0671021 standard
0.082182 standard
0.215504 standard
0.183235 standard
0.272217 standard
0.359122 standard
0.208171 standard
0.193618 standard
0.358413 standard
0.203831 standard
0.203741 standard
0.057124 standard
0.0896522 standard
0.208095 standard
0.15701 standard
0.27293 standard
0.288901 standard
0.179218 standard
0.38204 standard
0.131783 standard
0.205824 standard
0.19235 standard
0.0844409 standard
0.0702217 standard
0.00940425 standard
0.590263 standard
0.740852 standard
0.420377 standard
0.00827985 standard
0.0102859 standard
0.41443 standard
0.161185 standard
1.00056 standard
0.514068 standard
0.0128226 standard
0.00764623 standard
0.0693689 standard
0.0815222 standard
0.217561 standard
0.182042 standard
0.12194 standard
0.273018 standard
0.358506 standard
0.181907 standard
0.331226 standard
0.15804 standard
0.0351148 standard
0.0352259 standard
0.0431045 standard
0.170577 standard
0.287408 standard
0.159771 standard
0.392957 standard
0.202851 standard
0.182039 standard
0.0842994 standard
0.0728491 standard
0.00939514 standard
0.555452 standard
0.737494 standard
0.423013 standard
0.00801127 standard
0.010271 standard
0.405973 standard
1.00076 standard
0.481327 standard
0.0122206 standard
0.00743919 standard
0.069877 standard
0.0810129 standard
0.217472 standard
0.179215 standard
0.116376 standard
0.267909 standard
0.353672 standard
0.194796 standard
0.344664 standard
0.133626 standard
0.148552 standard
0.0243695 standard
0.0197528 standard
0.0239539 standard
0.02504 standard
0.0237061 standard
0.0656069 standard
0.17019 standard
0.0699972 standard
0.291763 standard
0.244425 standard
0.150964 standard
0.405054 standard
0.198634 standard
0.177758 standard
0.0844928 standard
0.0740226 standard
0.00919394 standard
0.53527 standard
0.0777886 standard
0.734508 standard
0.429233 standard
0.00786409 standard
0.0100888 standard
0.41964 standard
1.00059 standard
0.464072 standard
0.0119284 standard
0.0072498 standard
0.070615 standard
0.0805771 standard
0.21778 standard
0.177595 standard
0.113048 standard
0.262538 standard
0.348615 standard
0.183929 standard
0.333952 standard
0.0870703 standard
0.14402 standard
0.0391767 standard
0.024481 standard
0.0432212 standard
0.148091 standard
0.280038 standard
0.259984 standard
0.40371 standard
0.200025 standard
0.174072 standard
0.0846194 standard
0.0753884 standard
0.00501047 standard
0.00895099 standard
0.519315 standard
0.726041 standard
0.428224 standard
0.00778209 standard
0.0100412 standard
0.41172 standard
1.0002 standard
0.453143 standard
0.0116076 standard
0.00718222 standard
0.0731705 standard
0.0820903 standard
0.229675 standard
0.110167 standard
0.258436 standard
0.339843 standard
0.17292 standard
0.355698 standard
0.0627197 standard
0.12269 standard
0.0402507 standard
0.0147621 standard
0.0127061 standard
0.0223009 standard
0.00934756 standard
0.0217708 standard
0.0158791 standard
0.0322642 standard
0.144914 standard
0.289912 standard
0.254833 standard
0.145616 standard
0.415589 standard
0.201997 standard
0.0863639 standard
0.0780062 standard
0.0050288 standard
0.00875258 standard
0.502669 standard
0.706979 standard
0.451042 standard
0.00806978 standard
0.0104007 standard
0.434068 standard
1.00068 standard
0.436409 standard
0.0114065 standard
0.00724005 standard
0.0769324 standard
0.0844618 standard
0.238009 standard
0.10976 standard
0.261933 standard
0.336748 standard
0.171045 standard
0.349173 standard
0.115928 standard
0.1244 standard
0.0224541 standard
0.0141942 standard
0.0144751 standard
0.0163425 standard
0.0218618 standard
0.152142 standard
0.283057 standard
0.258959 standard
0.146517 standard
0.423209 standard
0.205754 standard
0.0888775 standard
0.0819149 standard
0.00507407 standard
0.00876698 standard
0.501713 standard
0.709328 standard
0.452795 standard
0.00805756 standard
0.0106793 standard
0.433626 standard
1.00261 standard
0.434405 standard
0.0114122 standard
0.00727201 standard
0.0790983 standard
0.0862132 standard
0.242516 standard
0.110406 standard
0.261388 standard
0.335896 standard
0.167673 standard
0.358357 standard
0.1199 standard
0.123453 standard
0.0135342 standard
0.0131341 standard
0.0110606 standard
0.00841041 standard
0.0129555 standard
0.013957 standard
0.0102533 standard
0.0150637 standard
0.151667 standard
0.285432 standard
0.256277 standard
0.14543 standard
0.429129 standard
0.210555 standard
0.0905069 standard
0.0841991 standard
0.00513219 standard
0.00880169 standard
0.49642 standard
0.70559 standard
0.454957 standard
0.00847079 standard
0.0108657 standard
0.443479 standard
1.00188 standard
0.43746 standard
0.0114356 standard
0.00747452 standard
0.0846414 standard
0.0909298 standard
0.257503 standard
0.112438 standard
0.267174 standard
0.34324 standard
0.166285 standard
0.358218 standard
0.126327 standard
0.1245 standard
0.0125878 standard
0.00984074 standard
0.008223 standard
0.0118944 standard
0.00842252 standard
0.00897013 standard
0.00737621 standard
0.00916586 standard
0.16192 standard
0.294245 standard
0.259453 standard
0.149987 standard
0.44994 standard
0.224666 standard
0.0961662 standard
0.00528316 standard
0.00895677 standard
0.506681 standard
0.722041 standard
0.48093 standard
0.0087641 standard
0.011348 standard
0.449441 standard
1.00255 standard
0.442565 standard
0.0116337 standard
0.00839204 standard
0.099348 standard
0.275663 standard
0.116337 standard
0.272937 standard
0.343164 standard
0.164735 standard
0.348844 standard
0.124601 standard
0.118016 standard
0.012073 standard
0.00842884 standard
0.00898727 standard
0.00553258 standard
0.00369156 standard
0.00544947 standard
0.00596714 standard
0.00589892 standard
0.0086766 standard
0.154018 standard
0.295017 standard
0.256259 standard
0.153081 standard
0.474129 standard
0.23995 standard
0.160699 standard
0.110477 standard
0.00556369 standard
0.00912662 standard
0.505413 standard
0.732732 standard
0.480404 standard
0.00904968 standard
0.0116842 standard
0.457365 standard
1.00129 standard
0.440648 standard
0.0118157 standard
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