Guided Ideographic Spin System Model Optimization

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Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

L-lysine

Simulation outputs:

InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1 Parameter Value
Field strength 499.84(MHz)
RMSD of the fit 0.01184
Temperature 298 K
pH 7.4
InChI InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1
pKa 2.16
pKa 9.06
pKa 10.54
Note 1 used matrix from 914(600MHz)

Sample description:

Compound Type Concentration
L-Lysine Solute 100mM
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

19 15 16 11 12 13 14 17 18
19 3.745 6.369 5.58 0 0 0 0 0 0
15 0 1.881 -19.821 11.652 4.66 0 0 0 0
16 0 0 1.909 4.66 11.652 0 0 0 0
11 0 0 0 1.499 -13.131 10.035 5.218 0 0
12 0 0 0 0 1.432 5.218 10.035 0 0
13 0 0 0 0 0 1.71 -15.088 7.589 7.589
14 0 0 0 0 0 0 1.723 7.589 7.589
17 0 0 0 0 0 0 0 3.012 -16.0
18 0 0 0 0 0 0 0 0 3.012

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

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PPM Amplitude Peak Type
0.020647 standard
0.0485584 standard
0.0445697 standard
0.0790155 standard
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0.36543 standard
0.394128 standard
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0.13289 standard
0.0286077 standard
0.0320543 standard
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0.514182 standard
1.00016 standard
0.514295 standard
0.264867 standard
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0.0153721 standard
0.0359601 standard
0.0776691 standard
1.0 standard
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1.0 standard
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0.609205 standard
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1.0 standard
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0.43616 standard
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0.622433 standard
1.00001 standard
0.439885 standard
0.349499 standard
0.5696 standard
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0.00678412 standard
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1.0 standard
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1.00001 standard
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1.0 standard
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