Guided Ideographic Spin System Model Optimization

Global links:

GISSMO Home

GISSMO Library

GISSMO Tutorial

GISSMO-GUI

Web Services:

Peak Search

Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

BMRB entry

ALATIS cross link

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

2-Deoxyguanosine

Simulation outputs:

InChI=1S/C10H13N5O4/c11-10-13-8-7(9(18)14-10)12-3-15(8)6-1-4(17)5(2-16)19-6/h3-6,16-17H,1-2H2,(H3,11,13,14,18)/t4-,5+,6+/m0/s1 Parameter Value
Field strength 400.13(MHz)
RMSD of the fit 0.02059
Temperature 298 K
pH 7.4
InChI InChI=1S/C10H13N5O4/c11-10-13-8-7(9(18)14-10)12-3-15(8)6-1-4(17)5(2-16)19-6/h3-6,16-17H,1-2H2,(H3,11,13,14,18)/t4-,5+,6+/m0/s1
Note 1 None

Sample description:

Compound Type Concentration
Deoxyguanosine Solute Saturated1
D2O Solvent 100%
sodium phosphate Buffer 50mM
sodium azide Cytocide 500uM
DSS Reference 500uM
Show/Hide Spin System Matrix

Spin System Matrix

20 21 25 26 27 24 22 23
20 2.503 -14.543 3.766 0 6.236 0 0 0
21 0 2.776 5.155 0 7.783 0 0 0
25 0 0 4.118 2.879 0 0 0 0
26 0 0 0 4.611 0 0 4.229 4.901
27 0 0 0 0 6.287 0 0 0
24 0 0 0 0 0 7.971 0 0
22 0 0 0 0 0 0 3.805 -12.0
23 0 0 0 0 0 0 0 3.751

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.150457 standard
0.192117 standard
0.195423 standard
0.177944 standard
0.213743 standard
0.246205 standard
0.243573 standard
0.192898 standard
0.174361 standard
0.225763 standard
0.229507 standard
0.251465 standard
0.183339 standard
0.178601 standard
0.135724 standard
0.164128 standard
0.183407 standard
0.444796 standard
0.456032 standard
0.466892 standard
0.460324 standard
0.186334 standard
0.167542 standard
0.421317 standard
0.420367 standard
0.43347 standard
0.433183 standard
0.289317 standard
0.464437 standard
0.289316 standard
1.0 standard
0.0330331 standard
0.458088 standard
0.506254 standard
0.503865 standard
0.290237 standard
0.0684651 standard
0.0568991 standard
0.789586 standard
1.0 standard
0.293474 standard
0.378589 standard
0.378243 standard
0.255584 standard
0.3654 standard
0.243653 standard
0.400199 standard
0.207044 standard
0.771707 standard
0.0508561 standard
0.0794731 standard
0.246638 standard
0.475762 standard
0.464226 standard
0.251833 standard
0.0825641 standard
0.0641091 standard
0.843067 standard
1.0 standard
0.372045 standard
0.374482 standard
0.375681 standard
0.338128 standard
0.248886 standard
0.408283 standard
0.225034 standard
0.816234 standard
0.0684881 standard
0.0990991 standard
0.236541 standard
0.30324 standard
0.314435 standard
0.413518 standard
0.294835 standard
0.281903 standard
0.242952 standard
0.0996812 standard
0.0758721 standard
0.860675 standard
1.0 standard
0.0691391 standard
0.375904 standard
0.37839 standard
0.387228 standard
0.358273 standard
0.254859 standard
0.417221 standard
0.240777 standard
0.855205 standard
0.077294 standard
0.104423 standard
0.108848 standard
0.122711 standard
0.235772 standard
0.294423 standard
0.296528 standard
0.298188 standard
0.287387 standard
0.281554 standard
0.274922 standard
0.244556 standard
0.109117 standard
0.0823583 standard
0.864458 standard
1.0 standard
0.382705 standard
0.384746 standard
0.395859 standard
0.369238 standard
0.259005 standard
0.426175 standard
0.250409 standard
0.878189 standard
0.085806 standard
0.114291 standard
0.118788 standard
0.128932 standard
0.238351 standard
0.292153 standard
0.291533 standard
0.254178 standard
0.236831 standard
0.27764 standard
0.273215 standard
0.248022 standard
0.117921 standard
0.088197 standard
0.055048 standard
0.866594 standard
1.0 standard
0.391686 standard
0.394858 standard
0.406415 standard
0.381912 standard
0.264867 standard
0.437785 standard
0.259844 standard
0.905216 standard
0.128814 standard
0.166221 standard
0.170056 standard
0.161862 standard
0.230928 standard
0.271431 standard
0.269284 standard
0.212198 standard
0.19411 standard
0.250175 standard
0.25262 standard
0.254455 standard
0.160634 standard
0.155296 standard
0.118367 standard
0.0980444 standard
0.127164 standard
0.577133 standard
1.0 standard
0.639329 standard
0.130621 standard
0.102012 standard
0.41999 standard
0.424366 standard
0.436829 standard
0.4252 standard
0.287415 standard
0.462867 standard
0.287413 standard
0.992864 standard
0.1434 standard
0.183392 standard
0.186926 standard
0.172789 standard
0.220136 standard
0.254903 standard
0.252373 standard
0.199846 standard
0.181023 standard
0.235102 standard
0.238438 standard
0.252348 standard
0.176001 standard
0.171096 standard
0.129983 standard
0.136512 standard
0.158042 standard
0.482833 standard
0.571676 standard
0.579488 standard
0.515335 standard
0.161349 standard
0.138572 standard
0.420704 standard
0.421128 standard
0.432118 standard
0.433361 standard
0.289532 standard
0.463858 standard
0.289536 standard
1.0 standard
0.150475 standard
0.192152 standard
0.195458 standard
0.177978 standard
0.21379 standard
0.246266 standard
0.243633 standard
0.192937 standard
0.174387 standard
0.225816 standard
0.229561 standard
0.25151 standard
0.183371 standard
0.178632 standard
0.135735 standard
0.164118 standard
0.183409 standard
0.444872 standard
0.456117 standard
0.466983 standard
0.460409 standard
0.186336 standard
0.167532 standard
0.421683 standard
0.419903 standard
0.433554 standard
0.433266 standard
0.289342 standard
0.464496 standard
0.28934 standard
1.0 standard
0.154591 standard
0.196667 standard
0.199959 standard
0.181343 standard
0.210153 standard
0.241703 standard
0.239057 standard
0.188769 standard
0.170327 standard
0.222534 standard
0.22613 standard
0.250261 standard
0.187615 standard
0.182959 standard
0.13929 standard
0.184457 standard
0.202085 standard
0.418604 standard
0.417997 standard
0.428503 standard
0.431288 standard
0.205338 standard
0.188627 standard
0.419512 standard
0.421761 standard
0.431676 standard
0.43335 standard
0.28995 standard
0.462398 standard
0.289462 standard
1.0 standard
0.157867 standard
0.19997 standard
0.203273 standard
0.183839 standard
0.206929 standard
0.238917 standard
0.236691 standard
0.186208 standard
0.167532 standard
0.218552 standard
0.2222 standard
0.251109 standard
0.190134 standard
0.185251 standard
0.142133 standard
0.199497 standard
0.216312 standard
0.400146 standard
0.395485 standard
0.407296 standard
0.412725 standard
0.220157 standard
0.205121 standard
0.422239 standard
0.42233 standard
0.430522 standard
0.432297 standard
0.289394 standard
0.461323 standard
0.289393 standard
1.0 standard
0.159814 standard
0.202358 standard
0.205624 standard
0.185492 standard
0.205183 standard
0.236748 standard
0.234569 standard
0.184284 standard
0.165484 standard
0.215605 standard
0.219507 standard
0.248435 standard
0.192859 standard
0.188298 standard
0.143727 standard
0.210707 standard
0.227381 standard
0.387557 standard
0.380807 standard
0.391942 standard
0.398571 standard
0.231457 standard
0.217245 standard
0.42177 standard
0.421941 standard
0.43156 standard
0.432498 standard
0.289468 standard
0.462995 standard
0.289468 standard
1.0 standard
0.160034 standard
0.204245 standard
0.207282 standard
0.185606 standard
0.205713 standard
0.235771 standard
0.232699 standard
0.182672 standard
0.164866 standard
0.215764 standard
0.219412 standard
0.252355 standard
0.194396 standard
0.190125 standard
0.144518 standard
0.215728 standard
0.232163 standard
0.381572 standard
0.374084 standard
0.385884 standard
0.392945 standard
0.236337 standard
0.222322 standard
0.423404 standard
0.419798 standard
0.431273 standard
0.431273 standard
0.290107 standard
0.460407 standard
0.289373 standard
1.0 standard
0.161709 standard
0.205327 standard
0.207987 standard
0.185929 standard
0.203776 standard
0.233995 standard
0.231766 standard
0.183011 standard
0.164013 standard
0.214527 standard
0.218464 standard
0.251644 standard
0.195033 standard
0.190513 standard
0.144937 standard
0.219821 standard
0.235764 standard
0.377699 standard
0.369974 standard
0.379612 standard
0.386927 standard
0.240711 standard
0.227263 standard
0.417983 standard
0.421937 standard
0.431418 standard
0.434049 standard
0.289328 standard
0.464479 standard
0.289328 standard
1.0 standard
0.162429 standard
0.205545 standard
0.208735 standard
0.18736 standard
0.203383 standard
0.231783 standard
0.22896 standard
0.181353 standard
0.163389 standard
0.211692 standard
0.215847 standard
0.247236 standard
0.195118 standard
0.190419 standard
0.146346 standard
0.22722 standard
0.242766 standard
0.368823 standard
0.360255 standard
0.372965 standard
0.380574 standard
0.248234 standard
0.235202 standard
0.416887 standard
0.421675 standard
0.432956 standard
0.429533 standard
0.289504 standard
0.463828 standard
0.289504 standard
1.0 standard
0.162756 standard
0.207463 standard
0.210394 standard
0.18705 standard
0.202299 standard
0.232422 standard
0.229811 standard
0.180687 standard
0.16221 standard
0.211797 standard
0.215816 standard
0.250951 standard
0.196711 standard
0.191866 standard
0.146185 standard
0.230445 standard
0.24575 standard
0.365583 standard
0.356781 standard
0.370392 standard
0.377931 standard
0.250534 standard
0.237749 standard
0.422764 standard
0.41985 standard
0.435422 standard
0.432766 standard
0.288899 standard
0.464505 standard
0.289814 standard
1.0 standard
0.1631 standard
0.207105 standard
0.210174 standard
0.18787 standard
0.202633 standard
0.234434 standard
0.232022 standard
0.18063 standard
0.162754 standard
0.210642 standard
0.214597 standard
0.251327 standard
0.195778 standard
0.191085 standard
0.146607 standard
0.232827 standard
0.248651 standard
0.362174 standard
0.352719 standard
0.364439 standard
0.372436 standard
0.253329 standard
0.24046 standard
0.420235 standard
0.420234 standard
0.429898 standard
0.433237 standard
0.289282 standard
0.458415 standard
0.290264 standard
1.0 standard
0.164796 standard
0.207791 standard
0.211003 standard
0.189123 standard
0.202291 standard
0.229546 standard
0.226055 standard
0.178424 standard
0.161632 standard
0.21142 standard
0.215428 standard
0.249497 standard
0.198096 standard
0.193444 standard
0.146845 standard
0.238309 standard
0.253615 standard
0.357518 standard
0.347826 standard
0.358945 standard
0.367108 standard
0.258355 standard
0.245842 standard
0.42432 standard
0.418596 standard
0.429376 standard
0.433714 standard
0.288666 standard
0.462781 standard
0.28972 standard
1.0 standard
0.163652 standard
0.209956 standard
0.213534 standard
0.190378 standard
0.201512 standard
0.229644 standard
0.22627 standard
0.176672 standard
0.160357 standard
0.211075 standard
0.214878 standard
0.247451 standard
0.200259 standard
0.196104 standard
0.148535 standard
0.246266 standard
0.261228 standard
0.34963 standard
0.339334 standard
0.350154 standard
0.358622 standard
0.26616 standard
0.254065 standard
0.421989 standard
0.421988 standard
0.431884 standard
0.431884 standard
0.2887 standard
0.461291 standard
0.289953 standard
1.0 standard
View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks