Guided Ideographic Spin System Model Optimization

Global links:

GISSMO Home

GISSMO Library

GISSMO Tutorial

GISSMO-GUI

Web Services:

Peak Search

Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

2-(2-Chlorobenzylthio)-1,4,5,6-tetrahydropyrimidine hydrochloride

Simulation outputs:

InChI=1S/C11H13ClN2S.ClH/c12-10-5-2-1-4-9(10)8-15-11-13-6-3-7-14-11;/h1-2,4-5H,3,6-8H2,(H,13,14);1H Parameter Value
Field strength 600.01(MHz)
RMSD of the fit 0.01605
Temperature 298 K
pH 7.4
InChI InChI=1S/C11H13ClN2S.ClH/c12-10-5-2-1-4-9(10)8-15-11-13-6-3-7-14-11;/h1-2,4-5H,3,6-8H2,(H,13,14);1H
Note 1 20?21
Note 2 16?17

Sample description:

Compound Type Concentration
2-(2-Chlorobenzylthio)-1,4,5,6-tetrahydropyrimidine hydrochloride Solute 75uM
DSS Reference 15uM
bis-Tris-d19 Buffer 11mM
NaCl . 150mM
NaN3 . 0.04%.
Na Formate . 200uM
Show/Hide Spin System Matrix

Spin System Matrix

16 17 18 19 20 21 22 23 24 25 26 27
16 7.363 7.154 0 0 7.154 1.5 0 0 0 0 0 0
17 0 7.375 0 0 1.5 7.154 0 0 0 0 0 0
18 0 0 1.859 -14.0 0 0 6.137 6.137 6.137 6.137 0 0
19 0 0 0 1.859 0 0 6.137 6.137 6.137 6.137 0 0
20 0 0 0 0 7.449 0 0 0 0 0 0 0
21 0 0 0 0 0 7.519 0 0 0 0 0 0
22 0 0 0 0 0 0 3.375 -14.0 0 0 0 0
23 0 0 0 0 0 0 0 3.375 0 0 0 0
24 0 0 0 0 0 0 0 0 3.375 -14.0 0 0
25 0 0 0 0 0 0 0 0 0 3.375 0 0
26 0 0 0 0 0 0 0 0 0 0 4.424 -14.0
27 0 0 0 0 0 0 0 0 0 0 0 4.424

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.0542038 standard
0.174833 standard
0.252383 standard
0.174649 standard
0.054187 standard
0.354092 standard
0.657234 standard
0.354472 standard
1.0 standard
0.0281779 standard
0.0402798 standard
0.141668 standard
0.199105 standard
0.298748 standard
0.229843 standard
0.168505 standard
0.05321 standard
0.034531 standard
0.00803403 standard
0.171204 standard
0.139006 standard
0.119546 standard
0.127835 standard
0.159951 standard
0.134911 standard
0.126068 standard
0.137881 standard
0.0329901 standard
0.114177 standard
0.193765 standard
0.159173 standard
0.0606901 standard
0.338265 standard
0.535752 standard
0.236445 standard
0.862997 standard
0.0439231 standard
1.0 standard
0.0509321 standard
0.0428671 standard
0.147298 standard
0.237554 standard
0.18531 standard
0.0650931 standard
0.383146 standard
0.641465 standard
0.302669 standard
1.0 standard
0.0741694 standard
0.904858 standard
0.117311 standard
0.0454791 standard
0.154585 standard
0.243135 standard
0.184353 standard
0.062401 standard
0.37721 standard
0.646988 standard
0.316564 standard
1.0 standard
0.0972212 standard
0.270573 standard
0.693419 standard
0.295749 standard
0.151268 standard
0.065923 standard
0.046442 standard
0.157177 standard
0.244263 standard
0.183918 standard
0.061543 standard
0.375665 standard
0.649603 standard
0.32121 standard
1.0 standard
0.107611 standard
0.277446 standard
0.600098 standard
0.264349 standard
0.151097 standard
0.149057 standard
0.0719575 standard
0.0471651 standard
0.158193 standard
0.24624 standard
0.183258 standard
0.060873 standard
0.37403 standard
0.650278 standard
0.325656 standard
1.0 standard
0.118286 standard
0.281422 standard
0.54097 standard
0.435174 standard
0.20935 standard
0.245675 standard
0.160865 standard
0.147839 standard
0.0781659 standard
0.0523032 standard
0.171874 standard
0.250106 standard
0.17789 standard
0.0573929 standard
0.360739 standard
0.653828 standard
0.348243 standard
1.0 standard
0.028823 standard
0.187492 standard
0.298134 standard
0.330604 standard
0.104653 standard
0.225338 standard
0.150334 standard
0.106975 standard
0.190744 standard
0.122208 standard
0.146407 standard
0.109812 standard
0.0544912 standard
0.177167 standard
0.253548 standard
0.173262 standard
0.0542895 standard
0.356404 standard
0.658304 standard
0.35441 standard
1.0 standard
0.0322681 standard
0.203917 standard
0.175699 standard
0.309236 standard
0.274556 standard
0.0603322 standard
0.0262782 standard
0.192363 standard
0.123408 standard
0.146904 standard
0.107677 standard
0.172345 standard
0.119389 standard
0.126825 standard
0.106272 standard
0.122223 standard
0.0544452 standard
0.176798 standard
0.253314 standard
0.173704 standard
0.054233 standard
0.355986 standard
0.659655 standard
0.354689 standard
1.0 standard
0.0353759 standard
0.212999 standard
0.309394 standard
0.278458 standard
0.210929 standard
0.0541243 standard
0.0157081 standard
0.180487 standard
0.124083 standard
0.124546 standard
0.115729 standard
0.166526 standard
0.122497 standard
0.11732 standard
0.111749 standard
0.109735 standard
0.129268 standard
0.0542967 standard
0.175846 standard
0.253198 standard
0.174425 standard
0.0541909 standard
0.354656 standard
0.656853 standard
0.35529 standard
1.0 standard
0.0376702 standard
0.236475 standard
0.304902 standard
0.28339 standard
0.183717 standard
0.0528231 standard
0.0305414 standard
0.010965 standard
0.17442 standard
0.130693 standard
0.113225 standard
0.122344 standard
0.162056 standard
0.127269 standard
0.11735 standard
0.134075 standard
0.0542038 standard
0.174737 standard
0.252693 standard
0.174677 standard
0.054195 standard
0.354095 standard
0.656994 standard
0.354473 standard
1.0 standard
0.0281779 standard
0.0402808 standard
0.141669 standard
0.199107 standard
0.29875 standard
0.229846 standard
0.168507 standard
0.053211 standard
0.034531 standard
0.008034 standard
0.171205 standard
0.139008 standard
0.119548 standard
0.127836 standard
0.159952 standard
0.134913 standard
0.126069 standard
0.137881 standard
0.0543833 standard
0.174784 standard
0.252589 standard
0.174831 standard
0.0542493 standard
0.354315 standard
0.656755 standard
0.354745 standard
1.0 standard
0.032277 standard
0.0431602 standard
0.138978 standard
0.16174 standard
0.167833 standard
0.27984 standard
0.19335 standard
0.174818 standard
0.159821 standard
0.0543911 standard
0.0390401 standard
0.169314 standard
0.147652 standard
0.129017 standard
0.133197 standard
0.160121 standard
0.143078 standard
0.131848 standard
0.140904 standard
0.0540705 standard
0.174791 standard
0.252753 standard
0.174802 standard
0.0542931 standard
0.354207 standard
0.65708 standard
0.35421 standard
1.0 standard
0.0345933 standard
0.0446277 standard
0.138765 standard
0.156779 standard
0.169965 standard
0.26244 standard
0.194177 standard
0.167914 standard
0.157803 standard
0.0552715 standard
0.0415461 standard
0.169294 standard
0.150058 standard
0.131849 standard
0.135702 standard
0.160241 standard
0.147144 standard
0.136596 standard
0.142722 standard
0.0542596 standard
0.174323 standard
0.252859 standard
0.174698 standard
0.0543101 standard
0.354671 standard
0.657592 standard
0.354518 standard
1.0 standard
0.0365231 standard
0.0460029 standard
0.138563 standard
0.154852 standard
0.247567 standard
0.162101 standard
0.154168 standard
0.0562284 standard
0.0425728 standard
0.168701 standard
0.151842 standard
0.13666 standard
0.138313 standard
0.162106 standard
0.150551 standard
0.138283 standard
0.1435 standard
0.0541456 standard
0.174332 standard
0.252328 standard
0.1747 standard
0.0542339 standard
0.354383 standard
0.656452 standard
0.354177 standard
1.0 standard
0.0399118 standard
0.0484879 standard
0.139376 standard
0.152376 standard
0.24554 standard
0.252995 standard
0.158451 standard
0.153155 standard
0.0578015 standard
0.0460995 standard
0.168731 standard
0.157533 standard
0.141279 standard
0.141004 standard
0.160922 standard
0.153594 standard
0.144009 standard
0.147456 standard
0.0542075 standard
0.174147 standard
0.252478 standard
0.174458 standard
0.054098 standard
0.353321 standard
0.656142 standard
0.354194 standard
1.0 standard
0.0412842 standard
0.0495451 standard
0.139677 standard
0.151047 standard
0.251393 standard
0.262396 standard
0.156969 standard
0.150354 standard
0.0583068 standard
0.0471361 standard
0.167413 standard
0.159414 standard
0.144052 standard
0.142053 standard
0.163027 standard
0.15768 standard
0.145662 standard
0.148103 standard
0.0541275 standard
0.174675 standard
0.252511 standard
0.17463 standard
0.0540873 standard
0.353532 standard
0.65549 standard
0.354147 standard
1.0 standard
0.0426696 standard
0.0505999 standard
0.140484 standard
0.151381 standard
0.251733 standard
0.259576 standard
0.158018 standard
0.152102 standard
0.0594846 standard
0.0493757 standard
0.167392 standard
0.161552 standard
0.146285 standard
0.14317 standard
0.163651 standard
0.16034 standard
0.14855 standard
0.149387 standard
0.054035 standard
0.174496 standard
0.252272 standard
0.174274 standard
0.0540391 standard
0.352974 standard
0.655302 standard
0.354604 standard
1.0 standard
0.0506808 standard
0.0567046 standard
0.147681 standard
0.155501 standard
0.148138 standard
0.167121 standard
0.161124 standard
0.141219 standard
0.159346 standard
0.154561 standard
0.0638046 standard
0.0564873 standard
0.171095 standard
0.170407 standard
0.153322 standard
0.14926 standard
0.167426 standard
0.167656 standard
0.153747 standard
0.154206 standard
View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks