Guided Ideographic Spin System Model Optimization

Global links:

GISSMO Home

GISSMO Library

GISSMO Tutorial

GISSMO-GUI

Web Services:

Peak Search

Mixture Simulation

Mol to jpg conversion

Simulation: simulation_1

Gateway cross link

Download simulation data

View entry XML

Download entry NMR-STAR

Download entry NMReDATA

External links:

NMRFAM Servers

pKa (R. Williams)

1H NMR (Hans J. Reich)

5-Methyl-2-(methylthio)-6-propylpyrimidin-4-ol

Simulation outputs:

InChI=1S/C9H14N2OS/c1-4-5-7-6(2)8(12)11-9(10-7)13-3/h4-5H2,1-3H3,(H,10,11,12) Parameter Value
Field strength 600.01(MHz)
RMSD of the fit 0.02611
Temperature 298 K
pH 7.4
InChI InChI=1S/C9H14N2OS/c1-4-5-7-6(2)8(12)11-9(10-7)13-3/h4-5H2,1-3H3,(H,10,11,12)
Note 1 17,18,19?20,21,22

Sample description:

Compound Type Concentration
5-Methyl-2-(methylthio)-6-propylpyrimidin-4-ol Solute 75uM
DSS Reference 15uM
bis-Tris-d19 Buffer 11mM
NaCl . 150mM
NaN3 . 0.04%.
Na Formate . 200uM
Show/Hide Spin System Matrix

Spin System Matrix

14 15 16 17 18 19 20 21 22 23 24 25 26
14 0.921 -14.0 -14.0 0 0 0 0 0 0 7.674 7.674 0 0
15 0 0.921 -14.0 0 0 0 0 0 0 7.674 7.674 0 0
16 0 0 0.921 0 0 0 0 0 0 7.674 7.674 0 0
17 0 0 0 1.96 -14.0 -14.0 0 0 0 0 0 0 0
18 0 0 0 0 1.96 -14.0 0 0 0 0 0 0 0
19 0 0 0 0 0 1.96 0 0 0 0 0 0 0
20 0 0 0 0 0 0 2.551 -14.0 -14.0 0 0 0 0
21 0 0 0 0 0 0 0 2.551 -14.0 0 0 0 0
22 0 0 0 0 0 0 0 0 2.551 0 0 0 0
23 0 0 0 0 0 0 0 0 0 1.626 -14.0 8.633 8.633
24 0 0 0 0 0 0 0 0 0 0 1.626 8.633 8.633
25 0 0 0 0 0 0 0 0 0 0 0 2.583 -14.0
26 0 0 0 0 0 0 0 0 0 0 0 0 2.583

Spectra

Select field strength to view simulated spectra and peak lists (standard and GSD): Autoscale

Help

To zoom into a region, draw a box around it.
Hover over the x/y-axis and use mouse-wheel to zoom in/out.
Hover over the x/y-axis hold down left-button to move around the spectra.
(De)activate a spectrum by clicking on its legend.
PPM Amplitude Peak Type
0.252666 standard
0.505385 standard
0.260058 standard
0.0239628 standard
0.0908951 standard
0.172627 standard
0.173654 standard
0.0896578 standard
0.0234168 standard
0.998737 standard
1.0 standard
0.180739 standard
0.338362 standard
0.171584 standard
0.0828381 standard
0.076142 standard
0.332767 standard
0.234056 standard
0.0640111 standard
0.0758291 standard
0.0757621 standard
0.111109 standard
0.0638391 standard
0.099553 standard
0.104819 standard
0.951214 standard
0.178023 standard
1.0 standard
0.0706531 standard
0.0512551 standard
0.113802 standard
0.355719 standard
0.247906 standard
0.0344731 standard
0.0766171 standard
0.123902 standard
0.110562 standard
0.084345 standard
0.965854 standard
0.190825 standard
1.0 standard
0.0894841 standard
0.139089 standard
0.384771 standard
0.25198 standard
0.029781 standard
0.0776861 standard
0.133937 standard
0.124937 standard
0.078682 standard
0.043595 standard
0.963047 standard
0.201585 standard
1.0 standard
0.376186 standard
0.109489 standard
0.150523 standard
0.398996 standard
0.252425 standard
0.0286584 standard
0.0789971 standard
0.137816 standard
0.131067 standard
0.079054 standard
0.0313 standard
0.965215 standard
0.206361 standard
1.0 standard
0.36184 standard
0.11753 standard
0.159538 standard
0.412132 standard
0.254859 standard
0.0278511 standard
0.080185 standard
0.142028 standard
0.136193 standard
0.079878 standard
0.02698 standard
0.967557 standard
0.21194 standard
1.00002 standard
0.354256 standard
0.123512 standard
0.206976 standard
0.464565 standard
0.257492 standard
0.0247291 standard
0.0866957 standard
0.160726 standard
0.154915 standard
0.0837026 standard
0.0220765 standard
0.958958 standard
1.00005 standard
0.3326 standard
0.148985 standard
0.213877 standard
0.454053 standard
0.244303 standard
0.0228012 standard
0.0836511 standard
0.157057 standard
0.153636 standard
0.0801394 standard
0.02098 standard
0.913379 standard
1.00013 standard
0.312024 standard
0.149812 standard
0.241515 standard
0.495224 standard
0.262339 standard
0.024362 standard
0.0922253 standard
0.171645 standard
0.168435 standard
0.0878109 standard
0.0228314 standard
0.987933 standard
1.00001 standard
0.227813 standard
0.336334 standard
0.166599 standard
0.249044 standard
0.50225 standard
0.261577 standard
0.0247019 standard
0.0914364 standard
0.171982 standard
0.172528 standard
0.0889529 standard
0.0227032 standard
0.995959 standard
1.0 standard
0.190065 standard
0.338132 standard
0.170514 standard
0.252891 standard
0.504943 standard
0.259905 standard
0.0239538 standard
0.0912034 standard
0.172579 standard
0.173512 standard
0.0895637 standard
0.0234008 standard
0.998379 standard
1.0 standard
0.180629 standard
0.338633 standard
0.171444 standard
0.25668 standard
0.505167 standard
0.258165 standard
0.0241583 standard
0.0907791 standard
0.172704 standard
0.173958 standard
0.090427 standard
0.0232184 standard
0.99772 standard
1.0 standard
0.176623 standard
0.337308 standard
0.171673 standard
0.256865 standard
0.505777 standard
0.258638 standard
0.0241377 standard
0.0910804 standard
0.172461 standard
0.174597 standard
0.0910053 standard
0.0232525 standard
1.0 standard
0.99988 standard
0.175764 standard
0.338439 standard
0.172021 standard
0.256256 standard
0.506497 standard
0.259117 standard
0.0236452 standard
0.0897909 standard
0.171912 standard
0.174732 standard
0.0907717 standard
0.0236544 standard
0.997677 standard
1.0 standard
0.174382 standard
0.338208 standard
0.17199 standard
0.256016 standard
0.506541 standard
0.259174 standard
0.0236441 standard
0.089731 standard
0.173593 standard
0.175123 standard
0.0920438 standard
0.0237274 standard
0.999228 standard
1.0 standard
0.173785 standard
0.338221 standard
0.171964 standard
0.258086 standard
0.506738 standard
0.258212 standard
0.0236701 standard
0.0905269 standard
0.174035 standard
0.17434 standard
0.0916446 standard
0.0237384 standard
0.999751 standard
1.0 standard
0.173531 standard
0.338084 standard
0.17201 standard
0.258163 standard
0.506953 standard
0.257903 standard
0.0236762 standard
0.0902012 standard
0.174039 standard
0.173061 standard
0.0907818 standard
0.0236613 standard
0.999761 standard
1.0 standard
0.173131 standard
0.337732 standard
0.171705 standard
0.258754 standard
0.506288 standard
0.258616 standard
0.0237115 standard
0.0895504 standard
0.173604 standard
0.172583 standard
0.0903561 standard
0.0236343 standard
0.999821 standard
1.0 standard
0.171906 standard
0.336846 standard
0.172146 standard
View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks View GSD Peaks