Guided Ideographic Spin System Model Optimization

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Simulation: simulation_1

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pKa (R. Williams)

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3-(1H-imidazol-1-yl)propylamine

Simulation outputs:

InChI=1S/C6H11N3/c7-2-1-4-9-5-3-8-6-9/h3,5-6H,1-2,4,7H2 Parameter Value
Field strength 600.01(MHz)
RMSD of the fit 0.08392
Temperature 298 K
pH 7.4
InChI InChI=1S/C6H11N3/c7-2-1-4-9-5-3-8-6-9/h3,5-6H,1-2,4,7H2
Note 1 14?17
Note 2 18 missing (D exchange?) or weak at 7.86
Note 3 12,13?15,16

Sample description:

Compound Type Concentration
3-(1H-imidazol-1-yl)propylamine Solute 75uM
DSS Reference 15uM
bis-Tris-d19 Buffer 11mM
NaCl . 150mM
NaN3 . 0.04%.
Na Formate . 200uM
Show/Hide Spin System Matrix

Spin System Matrix

10 11 12 13 14 15 16 17 18
10 2.191 -14.0 8.444 8.444 0 7.326 7.326 0 0
11 0 2.191 8.444 8.444 0 7.326 7.326 0 0
12 0 0 2.971 -14.0 0 0 0 0 0
13 0 0 0 2.971 0 0 0 0 0
14 0 0 0 0 7.105 0 0 0.08 0.4
15 0 0 0 0 0 4.191 -14.0 0 0
16 0 0 0 0 0 0 4.191 0 0
17 0 0 0 0 0 0 0 7.248 0.4
18 0 0 0 0 0 0 0 0 7.864

Spectra

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PPM Amplitude Peak Type
0.130956 standard
0.390886 standard
0.613029 standard
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0.993454 standard
0.500921 standard
0.511659 standard
1.00086 standard
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0.160892 standard
0.0110341 standard
0.528753 standard
0.926525 standard
0.393507 standard
0.999763 standard
1.0 standard
0.941304 standard
0.0592404 standard
0.0654664 standard
0.276829 standard
0.514532 standard
0.46555 standard
0.150543 standard
0.154206 standard
0.562634 standard
0.725081 standard
0.254089 standard
0.232842 standard
0.566557 standard
0.995419 standard
0.45013 standard
1.0 standard
0.999593 standard
0.956948 standard
0.0706371 standard
0.074152 standard
0.305211 standard
0.523502 standard
0.451674 standard
0.142082 standard
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0.778141 standard
0.298356 standard
0.560801 standard
1.0 standard
0.468956 standard
0.979565 standard
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0.141394 standard
0.141343 standard
0.550917 standard
0.805764 standard
0.320176 standard
0.554746 standard
1.00002 standard
0.474142 standard
0.971112 standard
0.97122 standard
0.935786 standard
0.083017 standard
0.327009 standard
0.540332 standard
0.441765 standard
0.142048 standard
0.549467 standard
0.830796 standard
0.340506 standard
0.550045 standard
1.0 standard
0.477626 standard
0.966305 standard
0.966392 standard
0.931283 standard
0.111705 standard
0.369711 standard
0.592605 standard
0.411927 standard
0.142049 standard
0.539968 standard
0.948274 standard
0.433971 standard
0.515736 standard
1.00005 standard
0.506656 standard
0.948873 standard
0.948895 standard
0.9163 standard
0.122166 standard
0.37719 standard
0.606603 standard
0.40638 standard
0.139932 standard
0.531798 standard
0.974624 standard
0.461697 standard
0.511469 standard
1.00017 standard
0.511487 standard
0.945513 standard
0.947744 standard
0.91587 standard
0.126163 standard
0.385378 standard
0.61161 standard
0.395461 standard
0.139443 standard
0.519998 standard
0.984464 standard
0.480849 standard
0.511336 standard
1.0 standard
0.511741 standard
0.945061 standard
0.945066 standard
0.910475 standard
0.127793 standard
0.387078 standard
0.610949 standard
0.395195 standard
0.138435 standard
0.520196 standard
0.988682 standard
0.486521 standard
0.51099 standard
1.0006 standard
0.511467 standard
0.943986 standard
0.94399 standard
0.916077 standard
0.130956 standard
0.39089 standard
0.613031 standard
0.391122 standard
0.135364 standard
0.509729 standard
0.993454 standard
0.500922 standard
0.511659 standard
1.00086 standard
0.511665 standard
0.94641 standard
0.942043 standard
0.919355 standard
0.131767 standard
0.392093 standard
0.616126 standard
0.392187 standard
0.13553 standard
0.508774 standard
0.992998 standard
0.50145 standard
0.512425 standard
1.00116 standard
0.512429 standard
0.942431 standard
0.94729 standard
0.921388 standard
0.132476 standard
0.391122 standard
0.616027 standard
0.388192 standard
0.135894 standard
0.507935 standard
0.994281 standard
0.500901 standard
0.512126 standard
1.00133 standard
0.512129 standard
0.949558 standard
0.949559 standard
0.912783 standard
0.134166 standard
0.389247 standard
0.616816 standard
0.39205 standard
0.134749 standard
0.504391 standard
0.996624 standard
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0.51247 standard
1.00085 standard
0.511786 standard
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0.134383 standard
0.390393 standard
0.615279 standard
0.39039 standard
0.134382 standard
0.505176 standard
0.993537 standard
0.505461 standard
0.51129 standard
1.0 standard
0.511292 standard
0.943161 standard
0.933982 standard
0.913488 standard
0.134319 standard
0.388351 standard
0.615927 standard
0.388406 standard
0.134324 standard
0.50526 standard
0.993704 standard
0.505562 standard
0.510453 standard
1.0 standard
0.511336 standard
0.946801 standard
0.939186 standard
0.907135 standard
0.134395 standard
0.386836 standard
0.616918 standard
0.386534 standard
0.134271 standard
0.505182 standard
0.992778 standard
0.505183 standard
0.510482 standard
1.0 standard
0.511275 standard
0.943054 standard
0.944976 standard
0.915331 standard
0.134618 standard
0.39368 standard
0.616895 standard
0.388674 standard
0.134225 standard
0.504369 standard
0.995948 standard
0.50437 standard
0.511309 standard
1.0 standard
0.51131 standard
0.943596 standard
0.943597 standard
0.898761 standard
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